Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D05
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.9  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.2  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   6.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.9  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 139 KNMFPLLKEARFTSTFK 189
           KNM P+LK+   TS FK
Sbjct: 173 KNMAPILKDLMETSYFK 189


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +3

Query: 579 QER-IDLIPTLKEKGNSLY 632
           QER  +L+P L+ KGN +Y
Sbjct: 465 QERESELVPYLENKGNGVY 483


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 173 NLASFSNGNIFLTCMYYFFNY 111
           N+++++N N +   +YY  NY
Sbjct: 92  NISNYNNNNNYNKKLYYNINY 112


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 173 NLASFSNGNIFLTCMYYFFNY 111
           N+++++N N +   +YY  NY
Sbjct: 330 NISNYNNNNNYNKKLYYNINY 350


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 173 NLASFSNGNIFLTCMYYFFNY 111
           N+++++N N +   +YY  NY
Sbjct: 92  NISNYNNDNNYNKKLYYNINY 112


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 345  VKKELVYAYPFVSKTLRELGQS 410
            V  EL+Y Y    KTL E+ Q+
Sbjct: 1005 VTPELIYEYQIHPKTLNEVLQA 1026


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,390
Number of Sequences: 438
Number of extensions: 4403
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)