Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D02
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29522| Best HMM Match : No HMM Matches (HMM E-Value=.)             293   8e-80
SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1)                 29   5.5  
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_14406| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     28   7.3  
SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8)            28   7.3  
SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)           28   9.6  
SB_8121| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08)                  28   9.6  

>SB_29522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score =  293 bits (720), Expect = 8e-80
 Identities = 141/168 (83%), Positives = 155/168 (92%)
 Frame = +1

Query: 91  MAATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 270
           MAATL+PYL AVR TLTAAMCLE+F SQVVE++ KPEVEVR+SKELLL P+VISRN  EK
Sbjct: 1   MAATLRPYLNAVRSTLTAAMCLENFDSQVVERHNKPEVEVRSSKELLLTPLVISRNEKEK 60

Query: 271 VLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITN 450
           VLIE SINS+R+SI +KQADEIEKILCKKFMRFMMMRAENF VLRRKPV+GY ISFLITN
Sbjct: 61  VLIEGSINSMRISIAVKQADEIEKILCKKFMRFMMMRAENFFVLRRKPVEGYDISFLITN 120

Query: 451 FHTEQMYKHKLVDFVIYFMEEIDKEISEMKLAVNARARICSEEFLKRF 594
           FHTEQM+KHKLVDFVI FMEEIDKEISEMKL++NARARIC+EEFLK F
Sbjct: 121 FHTEQMFKHKLVDFVIQFMEEIDKEISEMKLSLNARARICAEEFLKNF 168


>SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
 Frame = +1

Query: 190 TKPEVEVRTSKELLL---NPVVISRNSN---EKVLIESSINSIRVSIMIKQADEIEKILC 351
           T+ E E++T +E+     N   +   SN   EKV   + I+   +S+ +K+ DE+E+   
Sbjct: 31  TRKEDEMQTKEEIETKYENNKTVHGESNLEFEKVKSNAPIDKAEISVELKKRDEVERDYD 90

Query: 352 KKFMRF 369
           + F RF
Sbjct: 91  RLFTRF 96


>SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 23/104 (22%), Positives = 41/104 (39%)
 Frame = -1

Query: 663 IFHMNSYSMYNKDVSFYH*KK*LKSLQEFFRTNSGSCIDSQXXXXXXXXXXFHKVYYKID 484
           ++HM SY+ YN   S+YH    + S  ++   NS S                   YY   
Sbjct: 342 MYHMTSYAQYNSS-SYYHLMYHMTSYAQY---NSSSDYHLMYHMTSYARFNSSSYYY--- 394

Query: 483 QFMLIHLFGMEVSNQKADMVPINWFPP*YNEVFSSHHHEPHKFF 352
             ++ H+      N  +D   +++ P  +N  +   +H PH  +
Sbjct: 395 --LMYHMTSYAQYNSSSDYYLMSYVP--HNANYYLMYHIPHNAY 434


>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
 Frame = +1

Query: 304 VSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITNFHTEQMYKHKL 483
           V+ M+K +DE+   L       +++    F       + G H   L+     E  ++HK+
Sbjct: 300 VAEMVKASDEVSIPLLASLSNAIIVEKRIFAGTLVNVIRGCHCPKLLKTIRKELDHEHKV 359

Query: 484 V----DFVIYFMEEIDKEISEMK----LAVNARARICSEEFLKR 591
           +    + V +  EE++K + E K            I +EE LKR
Sbjct: 360 LEGNAERVPFVDEEVEKVVKEEKKEEITPEEEEEEIVAEEMLKR 403


>SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1)
          Length = 613

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
 Frame = +1

Query: 265 EKVLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIV-----LRRKPVDGYH 429
           +K+L  + + +  +S  IKQ +    +L K F +FM  + +NF +        K V   H
Sbjct: 327 KKLLTHNDMRAY-ISTPIKQGEFTLHVLIKDFNKFMFNQTKNFCMSCLQCFNSKKVLTNH 385

Query: 430 ISFLITNFHTEQMYKHKL--VDFVIY 501
           I   +  + T+    HK   V FVIY
Sbjct: 386 IENCLKIYGTQFTNHHKQQPVPFVIY 411


>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 118 LDTVLKLQPL*KIILSQRSRHTLSSFQFFSHEHRL 14
           LD  LKL P+  ++LS      L+  + +SHE+ L
Sbjct: 110 LDAALKLDPMEVLLLSDEDNPVLTGVKKWSHEYSL 144


>SB_14406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 190 TKPEVEVRTSKELLLNPVVISRNSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMRF 369
           TK E+E +      ++    S    EKV   + I+   +S+ +K+ DE+E+   + F RF
Sbjct: 3   TKEEIETKYENNKTVHGE--SNLEFEKVKSNAPIDKAEISVELKKRDEVERDYDRLFTRF 60


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 460 EQMYKHKLVDFVIYFMEEIDKEISEMKLAV 549
           +Q Y  KLV+    F+E+  KEI E+K A+
Sbjct: 162 KQEYAEKLVELEKQFLEKYTKEIEELKQAL 191


>SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8)
          Length = 651

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
 Frame = +1

Query: 82  FSTMAATLKPYLTAVRHTLT----AAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVI 249
           F ++A+ L+P+LTA ++           L+     +++++ KP+V  + +  L L    +
Sbjct: 351 FESVASKLQPFLTAFQYDNPILPFLVSRLQKVIQSLMKRFIKPDVLQQANSPLKLAKFDL 410

Query: 250 SRNSN----EKVLIESSINS-IRVSIMIKQADEIEKILCKK--FMRF 369
           S   N    +KV +     + IR  ++ K+  E++ +L +K  F++F
Sbjct: 411 SNKENYLDAKKVDVGFVAQAKIRKLLLDKKVSELQAVLAQKEVFLKF 457


>SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)
          Length = 945

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +1

Query: 442 ITNFHTEQMYKHKLVDFVIYF--MEEIDKEI 528
           I N++T  +Y + +++FV+YF  M E  KE+
Sbjct: 229 IDNYYTYVLYLNSMLNFVVYFLRMPEFRKEL 259


>SB_8121| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08)
          Length = 292

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +1

Query: 442 ITNFHTEQMYKHKLVDFVIYF--MEEIDKEI 528
           I N++T  +Y + +++FV+YF  M E  KE+
Sbjct: 229 IDNYYTYVLYLNSMLNFVVYFLRMPEFRKEL 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,668,756
Number of Sequences: 59808
Number of extensions: 377466
Number of successful extensions: 699
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)