Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D01
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    31   0.17 
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   3.7  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    27   3.7  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   4.8  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   4.8  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   4.8  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   4.8  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 19/65 (29%), Positives = 37/65 (56%)
 Frame = +2

Query: 422  FVSFADLCELENNIKTLINKMSRDKSVWFAEEILLDAKLINFQLESGEWDAVEEMLRAEA 601
            FV+ + L   +N+I  L+N+  +DKS W  +E+LL+A  + F ++  E+   ++M     
Sbjct: 1459 FVNTSRLTYRQNDIYVLLNETMKDKS-WPGKELLLEA-YVKFLIKYPEFIKSQKMEEVHQ 1516

Query: 602  QLSRD 616
             + R+
Sbjct: 1517 VIVRE 1521


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 488  RDKSVWFAEEILLDAKLINFQLESGEWDAVE 580
            R+  +  A+EIL + K ++F   +GEW  VE
Sbjct: 1463 RELQLKTAKEILSNCKHLDFDYVNGEWATVE 1493


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 533 KLINFQLESGEWDAVEEMLRAEAQLSRDVETGRLRPKKASE 655
           KL N     G+ DA+++  + EA++ + VE  RLR ++ +E
Sbjct: 334 KLSNLMHVLGD-DAIKDPTKIEAEVRKQVEERRLRHERENE 373


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 278 NTNIGIKYLHETREIQFGFQFSVKLLTDTVFYFFRLFMYR 159
           N     ++L     I FGF   V L T+T+ +FF+  +YR
Sbjct: 32  NFPFAARWLRICSYIMFGFAL-VCLFTNTIVFFFKHTIYR 70


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 278 NTNIGIKYLHETREIQFGFQFSVKLLTDTVFYFFRLFMYR 159
           N     ++L     I FGF   V L T+T+ +FF+  +YR
Sbjct: 32  NFPFAARWLRICSYIMFGFAL-VCLFTNTIVFFFKHTIYR 70


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 278 NTNIGIKYLHETREIQFGFQFSVKLLTDTVFYFFRLFMYR 159
           N     ++L     I FGF   V L T+T+ +FF+  +YR
Sbjct: 32  NFPFAARWLRICSYIMFGFAL-VCLFTNTIVFFFKHTIYR 70


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 278 NTNIGIKYLHETREIQFGFQFSVKLLTDTVFYFFRLFMYR 159
           N     ++L     I FGF   V L T+T+ +FF+  +YR
Sbjct: 32  NFPFAARWLRICSYIMFGFAL-VCLFTNTIVFFFKHTIYR 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,563
Number of Sequences: 5004
Number of extensions: 55047
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)