Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D01
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18221| Best HMM Match : HHH (HMM E-Value=0.65)                      31   1.3  
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   29   3.9  

>SB_18221| Best HMM Match : HHH (HMM E-Value=0.65)
          Length = 324

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 437 DLCELENNIKTLINKMSRDKSVWFAEEILLDAKLIN-FQLESGEWDAVEEMLRAEAQLSR 613
           +L      ++  +N +S   SV  + E LL  + +N F +   +   V E + A+A+  R
Sbjct: 60  ELASRLTQVRGKLNTVSEVVSVLESSECLLKVECLNAFVVRKVDNSVVIERIVAQAKTKR 119

Query: 614 DVETGRLRPKKASE 655
               GR++PK+  +
Sbjct: 120 SFSFGRIKPKEQED 133


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +2

Query: 521 LLDAKLINFQLESGEWDAVEEMLRAEAQLSRDVETGRLRPKKASEYTLR 667
           LL+A++   +LE  + +   E L+AEA+L R  E  RLR K+  E   R
Sbjct: 558 LLEARIKAQKLEEEQREL--ERLQAEAELKRKQELERLREKRKEEKAQR 604


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,408,794
Number of Sequences: 59808
Number of extensions: 362414
Number of successful extensions: 711
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)