Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D01
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate recep...    32   0.48 
AF318609-1|AAK01097.1|  425|Caenorhabditis elegans ionotropic gl...    32   0.48 
AL132876-6|CAC48121.2|  350|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical...    28   7.9  

>U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 5 protein.
          Length = 932

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +2

Query: 470 LINKMSRDKSVWFAEEILLDAKLINFQLESGEWDA-VEEMLRAEAQLSRDVETGRLRPKK 646
           L+ ++S+D    +    + D K  N +  +G WD  + E+LR EA+++    T   R  +
Sbjct: 472 LLAELSKDLGFTYTIHAVKDGKYGNDKYGNGSWDGMMGEILRGEAEMAVAPLTVNYRRSE 531

Query: 647 ASEYTLRLIAEVLHIMH 697
           A ++T   ++  + I++
Sbjct: 532 AVDFTKPFLSLGISILY 548


>AF318609-1|AAK01097.1|  425|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-5 protein.
          Length = 425

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +2

Query: 470 LINKMSRDKSVWFAEEILLDAKLINFQLESGEWDA-VEEMLRAEAQLSRDVETGRLRPKK 646
           L+ ++S+D    +    + D K  N +  +G WD  + E+LR EA+++    T   R  +
Sbjct: 32  LLAELSKDLGFTYTIHAVKDGKYGNDKYGNGSWDGMMGEILRGEAEMAVAPLTVNYRRSE 91

Query: 647 ASEYTLRLIAEVLHIMH 697
           A ++T   ++  + I++
Sbjct: 92  AVDFTKPFLSLGISILY 108


>AL132876-6|CAC48121.2|  350|Caenorhabditis elegans Hypothetical
           protein Y105E8A.6 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 569 DAVEEMLRAEAQLSRDVETGRLRPKKASEYTLRL 670
           +A  E+LR   Q  RD E G  + K+  EYTLRL
Sbjct: 170 NATTEVLR-RGQRGRDGEDGNKKKKEEIEYTLRL 202


>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 476 NKMSRDKSVWFAEEILLDAKLINFQLESGEWDAVEEMLRAEAQLSRDVETGRLRPKKASE 655
           +KM+ DK   +A+E   D K + +    GEW  V E +  +  +S   +  +     +SE
Sbjct: 216 DKMTSDKCNEYAQEKSTDDKTLKYLTLCGEWCMVSEDMLVKDDVSMKDDCKKSCGGDSSE 275

Query: 656 Y 658
           Y
Sbjct: 276 Y 276


>AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical
           protein C35E7.3 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 413 KYFFVSFADLCELENNIKTLI 475
           K+F +++++LCE +NNI  +I
Sbjct: 419 KWFLLNYSNLCEKKNNISAMI 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,994,051
Number of Sequences: 27780
Number of extensions: 299597
Number of successful extensions: 698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)