Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_C24
         (813 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    25   0.95 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   3.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.8  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.8  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 576 GKKLVELGFAKASFPKELKKNTIES 650
           G+ LVE G  K   P+E  K T+ S
Sbjct: 20  GRTLVEKGLRKQGVPREATKITLSS 44


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 568 WILVKNWWSLDLQKHHFLK 624
           W+L+KN  + D + H F K
Sbjct: 405 WVLLKNKVTSDTRTHQFAK 423


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 739 AGIGGRFSDQMPFLRLFACASADNRAGAICDSMVFF 632
           AG+G    D + F R       DN   A+  ++V F
Sbjct: 430 AGMGETIEDLLHFCRTMYSMKVDNAEYALLTAIVIF 465


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 346 TKPQYIYRYGIPVNLHYQ--LSCGE 414
           TKP  I +Y IPV L  +  +SC +
Sbjct: 179 TKPTAIQKYAIPVILSGRDLMSCAQ 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,133
Number of Sequences: 336
Number of extensions: 4611
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)