Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_C24
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)                    31   0.84 
SB_6937| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.5  
SB_36188| Best HMM Match : FMN_bind (HMM E-Value=0.51)                 30   1.9  
SB_46526| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_42234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          29   4.5  
SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  

>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
          Length = 475

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 134 YVVKYSSFFLRHFDVYRY 81
           YV+KY   F RHFD+Y+Y
Sbjct: 82  YVMKYFHLFARHFDLYKY 99


>SB_6937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 573 IGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWSE 719
           + ++LV  G A  +  KEL+ + +   +   LL AE +A+    G+W +
Sbjct: 7   VNEELVRQGLAVTARCKELENHKLYQGLFTRLLKAEVRAEKTGKGVWEK 55


>SB_36188| Best HMM Match : FMN_bind (HMM E-Value=0.51)
          Length = 486

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 679 KHKQKASETAFGLRISHQFQHISFIGEKVHSLL 777
           K ++K S  AF LR+ +  QH  FIGE ++  L
Sbjct: 80  KREEKESVAAFKLRLWNAIQHCGFIGETLNKNL 112


>SB_46526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 141 LLQQDYRGVNIAVYALATAGLAISVHKIRPVSKFSKA--SKVPDHFIRNHEPLKGLY 305
           +L+Q Y G  I   AL  A       +IRP  K +K   S   DH   NH P  G Y
Sbjct: 78  VLKQSYAG--IVTLALEAAKTNSDTPQIRPHYKTAKPGLSDSNDHDHNNHAPFSGFY 132


>SB_42234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 486 PIGRDNDDLVSTVLLHLPQPKSKDVQTLD-IGKKLVELGFAKASFPKELKKNTIESQI 656
           P G +ND+ +   L  + QP SKDV ++D +  KL+       SF  ++  N++E  I
Sbjct: 201 PDGLENDNALLDGLEKITQPMSKDVSSMDCVDSKLLGNEIKAISFNADV-GNSLEDTI 257


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = -3

Query: 628 NSLGNDAFANPSS-TNFLPISNV*TSLLLG*GKCNNTVETRSSLSLPIGFNVTCWPLATH 452
           +SL +D   + SS ++FL +S++ +  L      +  + + SSLS+ +  + +     T 
Sbjct: 531 SSLPSDFLTSSSSLSDFLTLSSLLSDFLTSSSSLSVFLTSSSSLSVFLTSSSSLSDFLTS 590

Query: 451 SSQLTAFPLTTSIPHSLTGSGGL 383
           SS L+ F  ++S+P     S  L
Sbjct: 591 SSSLSVFLTSSSLPSDFLTSSSL 613


>SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 603 AKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPPI 734
           A    PK+   +T+E+ I P  L+ +A AK +     S  LPPI
Sbjct: 359 ATCPIPKQRPPSTVENDIRPIALTCQA-AKVMEGFTLSRILPPI 401


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,354,367
Number of Sequences: 59808
Number of extensions: 509613
Number of successful extensions: 1144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)