Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_C24
(813 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81521-1|CAB04226.1| 319|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z77133-7|CAB00865.2| 735|Caenorhabditis elegans Hypothetical pr... 29 4.0
AL008868-4|CAO82021.1| 735|Caenorhabditis elegans Hypothetical ... 29 4.0
U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor staphylo... 28 6.9
U23182-3|AAK70642.1| 252|Caenorhabditis elegans Hypothetical pr... 28 6.9
U23510-11|AAO38610.1| 444|Caenorhabditis elegans Hypothetical p... 28 9.1
U23510-10|AAC46780.1| 979|Caenorhabditis elegans Hypothetical p... 28 9.1
>Z81521-1|CAB04226.1| 319|Caenorhabditis elegans Hypothetical
protein F32A11.1 protein.
Length = 319
Score = 34.3 bits (75), Expect = 0.11
Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
Frame = +3
Query: 174 AVYALATAGLAISVHKIRPVSKFSKASKVPDHFIRNHEPLKGLYAGVQHSPVRVLVNHKA 353
A+ + AG+ I + R KF +++P FIR LKG V S + V H+
Sbjct: 44 AIVGVGLAGVIIYLRNSRLFHKFQHVNQIPKDFIRKELELKGRVREVLPSG-ELRVEHEP 102
Query: 354 PIYLPLWHSSKPP----LPVKLWGIEVVSGNAVNWLECVARGQQVTLKPIG----RDNDD 509
+ +P K L ++L G+E+ + +A+ ++T KP+ +D +
Sbjct: 103 IMKIPFLPKRKNVDTGLLNLRLAGVELSQSGQ----QFLAKDLRLTNKPVTFTVIKDVEG 158
Query: 510 LVSTVLLHLPQPKSKDVQTLDIGKKLVELGFAKASFPKELKK----NTIE--SQIAPALL 671
V + ++ +T ++ ++V G+A+ P ++K TI S++ LL
Sbjct: 159 APDAVDADVTVKRTAFGRT-NLNLEVVRRGYARVPAPDQVKHLKSLQTIPAYSRLISRLL 217
Query: 672 SAEAQAKSLRNGIWSEN 722
+E A G+W +
Sbjct: 218 MSEKVADRRGVGVWERD 234
>Z77133-7|CAB00865.2| 735|Caenorhabditis elegans Hypothetical
protein K03A11.1 protein.
Length = 735
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 567 LDIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNG 707
+ IGKK E K KELKKN + A + A+AK + G
Sbjct: 443 VSIGKKFDEAQINKLQTEKELKKNAQKQANAAKMREKRAKAKEEQEG 489
>AL008868-4|CAO82021.1| 735|Caenorhabditis elegans Hypothetical
protein K03A11.1 protein.
Length = 735
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 567 LDIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNG 707
+ IGKK E K KELKKN + A + A+AK + G
Sbjct: 443 VSIGKKFDEAQINKLQTEKELKKNAQKQANAAKMREKRAKAKEEQEG 489
>U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor
staphylococcal nuclease homologprotein 1 protein.
Length = 914
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 543 PKSKDVQTLDIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWS 716
P + +++ + LVE G A F E S ALLSAE +AK + IW+
Sbjct: 616 PDGNTSRAINLSEALVENGLASLHFTAE------RSGHYNALLSAENKAKKAKKNIWA 667
>U23182-3|AAK70642.1| 252|Caenorhabditis elegans Hypothetical
protein F40B5.3 protein.
Length = 252
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 170 HSSICPSHRWSRHICS*DSP 229
+ S+CP + RH CS DSP
Sbjct: 33 NKSVCPCENFYRHACSFDSP 52
>U23510-11|AAO38610.1| 444|Caenorhabditis elegans Hypothetical
protein R12C12.1b protein.
Length = 444
Score = 27.9 bits (59), Expect = 9.1
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
Frame = +3
Query: 411 GIEVVSGNAVNWLECVARGQQVTLKPIGRDNDDLVSTVLLHLPQP-KSKDVQTLDIGKKL 587
G+ S A+ +A+ + + + +D LV+ + +P K ++ +DI K+L
Sbjct: 263 GLREASQVAILNANYMAKRLENDYRIVYKDEQGLVAHEFIMDCKPFKKHGIEVVDIAKRL 322
Query: 588 VELGFAKASF-----------PKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPPI 734
++ GF + P E + ++ ALLS + + + NG ++L P+
Sbjct: 323 MDYGFHSPTMSWPVHDCLMIEPTESEDKAEMDRLVEALLSIREEIRQVENGSLDKHLNPL 382
>U23510-10|AAC46780.1| 979|Caenorhabditis elegans Hypothetical
protein R12C12.1a protein.
Length = 979
Score = 27.9 bits (59), Expect = 9.1
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
Frame = +3
Query: 411 GIEVVSGNAVNWLECVARGQQVTLKPIGRDNDDLVSTVLLHLPQP-KSKDVQTLDIGKKL 587
G+ S A+ +A+ + + + +D LV+ + +P K ++ +DI K+L
Sbjct: 798 GLREASQVAILNANYMAKRLENDYRIVYKDEQGLVAHEFIMDCKPFKKHGIEVVDIAKRL 857
Query: 588 VELGFAKASF-----------PKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPPI 734
++ GF + P E + ++ ALLS + + + NG ++L P+
Sbjct: 858 MDYGFHSPTMSWPVHDCLMIEPTESEDKAEMDRLVEALLSIREEIRQVENGSLDKHLNPL 917
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,610,201
Number of Sequences: 27780
Number of extensions: 408586
Number of successful extensions: 1054
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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