Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_C19
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    73   3e-14
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    30   0.38 
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    29   0.88 
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    28   1.5  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    27   2.0  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   2.0  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.7  
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    27   3.6  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    25   8.2  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    25   8.2  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   8.2  

>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
 Frame = +3

Query: 216 LKNVQKVAFSSNTTNNMDTTYMEIPLYDVEK-QQPLEKRKA---RLHYXSRKRGMLXNDL 383
           L N+  +  S+   N M     E    D+++  +  E R A   RL Y SRKRG+L  DL
Sbjct: 7   LSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAMLARLKYQSRKRGILETDL 66

Query: 384 LLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEF-DNEIMNLLKKH 560
           LLS FAK  ++ +       YD+L++ P  DWDI YW   ++  P+++  +++   L K+
Sbjct: 67  LLSNFAKDQIDKYPVSLLREYDQLLDEP--DWDILYWCSGEREAPEKWKSSQVFKELSKY 124

Query: 561 AKNEDKIALRQPDL 602
            +++    LR P+L
Sbjct: 125 CRSQRNHTLRMPEL 138


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 225 VQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPL-EKRKARLHYXSRKRGMLXNDLLLSTFA 401
           +Q + F  +  NN+DTT ++  L D+ K+  +        H+ + + G +   L+ + F 
Sbjct: 654 LQAIIFDFSAVNNLDTTAVQ-SLIDIRKELEIYANETVEFHFTNIRSGWIKRTLVAAGFG 712

Query: 402 K 404
           K
Sbjct: 713 K 713


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 420 FNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNED 575
           F  K+ +   + I S +++ +IF W  +++   +E DNE +N  KK +  ED
Sbjct: 212 FWHKEVVQPIKAIQSGNDEEEIFSW-GDERSDEEESDNEQVNDEKKQSSEED 262


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -3

Query: 599 IGLSECNFIFIFSMFFEKIHNFIVK 525
           IGLS  NF+  FS FFE I +F++K
Sbjct: 288 IGLS--NFVNSFSSFFELISHFLIK 310


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 30/139 (21%), Positives = 52/139 (37%)
 Frame = +3

Query: 186 TRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYXSRKRG 365
           TR   L+   LK+++ +    +    MD    ++ +   +    LEKRKA LH    K  
Sbjct: 7   TREWILTLRLLKDLEDMDSIGDNVTEMDAFVRDLTM---KPYAELEKRKAELHAQKLKLV 63

Query: 366 MLXNDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMN 545
                LL   +    L  +   Q   Y  L NS  +D+        +   P +     + 
Sbjct: 64  QKRQQLLRDNY--NVLVDYARNQDAFYQLLENS-RHDFKELVLHTNQLYEPVKRSQNFLT 120

Query: 546 LLKKHAKNEDKIALRQPDL 602
            + +H ++   +   QP L
Sbjct: 121 SISEHYRDAKLMHQVQPQL 139


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +3

Query: 111 ETILLKRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNM 266
           ET+ +K++ LSK+ K+++++IKM      NL +    N+ K   S  T +++
Sbjct: 33  ETVAVKKVKLSKMLKSDLSVIKMEIDLLKNLDH---PNIVKYRGSYQTNDSL 81


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 123 LKRLSLSKIDKNNMNLIK----MLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIP 290
           L+ L + ++D N +  +K    M+H R L +S NA+  ++   F    T  MD      P
Sbjct: 756 LQNLMVLQLDNNKLTNLKASQPMIHLRILRISNNAIHQLEVDQFPHLRTLYMDLNRFNRP 815


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 189 RTLNLSYNALKNVQKVAFSSNTTNNMDT-TYMEIPLYDVEKQQPLEKRKARLHYXSRKR 362
           R+L  +YN    +     SS++T N +     ++P    E+++   KRK  +   +RKR
Sbjct: 144 RSLIETYNLSSRISSSDNSSSSTGNEEVRNRSKLPSSKKEREELFRKRKEEMILAARKR 202


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 126 KRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYME 284
           K L+L +I++  M++IK   +    L+Y+  K V+K              Y+E
Sbjct: 460 KGLTLEEINELYMSVIKPWESGNFKLNYSEQKKVEKEKSRKGGARGESVEYVE 512


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 645 RNKFILLTLHFRFNVDRVVGVQFY 574
           R+KF+L++L    N+  ++G+Q Y
Sbjct: 16  RSKFVLISLILLLNLGLLLGIQIY 39


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 294 YDVEKQQPLEKRKARLHYXSRKRGMLXNDLLLSTFAKKY 410
           Y+V KQQ   + +    + ++KRG+  N+  L   AKKY
Sbjct: 783 YNVAKQQRAYEEEINRIWNAQKRGLSINN--LEELAKKY 819


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,364
Number of Sequences: 5004
Number of extensions: 58547
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)