Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_C19
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0049 + 19238794-19239003,19239359-19239505,19239595-192397...    31   0.92 
04_04_1600 + 34704527-34704758,34705393-34706777                       30   2.1  
06_01_1170 - 10002650-10004122                                         29   2.8  
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    29   3.7  
06_03_1218 - 28488661-28488757,28488924-28488988,28489352-284894...    29   3.7  
02_02_0548 - 11403442-11404205,11404520-11404811,11404917-114050...    29   3.7  
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965...    29   4.9  

>02_04_0049 +
           19238794-19239003,19239359-19239505,19239595-19239750,
           19239870-19239992,19240073-19240241,19240700-19240782,
           19240917-19241018,19241104-19241192,19241317-19241407,
           19241734-19241847,19242371-19242447,19242534-19242612,
           19242710-19242778,19243022-19243197,19243309-19243365,
           19243460-19243550,19243644-19243742,19243878-19244063
          Length = 705

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +3

Query: 426 EKQTMMYDRLINSPSNDW----DIFYWIVEKKPTPKEFDNEIMNLLK 554
           +K   MY+R IN P+  W    D FYW  ++K  P E  +E +++ K
Sbjct: 69  KKYQKMYERSINDPAGFWSEIADAFYW--KEKWNPSEVCSENLDVTK 113


>04_04_1600 + 34704527-34704758,34705393-34706777
          Length = 538

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 347 VMQSCFTFLQRLLFLNIIKRNLHVGCIHVV 258
           VM  C  F+QR L +N +++ + VGC+  +
Sbjct: 81  VMSGCILFIQRDLHINEVQQEVLVGCLSFI 110


>06_01_1170 - 10002650-10004122
          Length = 490

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 210 NALKNVQKVAFSSNTTNNMDTTYMEIPLYDV 302
           N L N+Q  +F SNT   ++  Y+E PL D+
Sbjct: 220 NFLLNLQSSSFVSNTFGQLERRYLERPLADM 250


>09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,
            3067535-3067648,3068614-3068718,3068930-3069064,
            3069148-3069203,3069277-3069382,3069515-3069631,
            3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +3

Query: 147  IDKNNMNLIKMLHTRTLNLSYNALK----NVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQ 314
            ++    + +KM H+   NLSY  LK    N  K+A +S   +N +T Y   P    +   
Sbjct: 839  LNLRTFSTLKMAHSIFKNLSYVQLKEMMLNNAKIANTSGVFSNSNTNYSPSPALSTQAVP 898

Query: 315  P 317
            P
Sbjct: 899  P 899


>06_03_1218 -
           28488661-28488757,28488924-28488988,28489352-28489448,
           28489647-28489852,28489853-28490152
          Length = 254

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 165 NLIKMLHTRTLNLSYNALKN---VQKVAFSSNTTNNMDTTYMEIPLYDVEKQQP 317
           NL K+LH   LNLS+N+L     +  + FSS    ++   +++ PL +++   P
Sbjct: 43  NLTKLLH---LNLSHNSLSGGLPMDSLLFSSIAVLDVSFNHLDGPLQELQSSNP 93


>02_02_0548 -
           11403442-11404205,11404520-11404811,11404917-11405016,
           11405049-11405458
          Length = 521

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +3

Query: 129 RLSLSKIDKNNM-NLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVE 305
           +LSL K+  N + N++K LH ++ NL+YN  K++  V   S    NMD T     + D+ 
Sbjct: 400 KLSL-KLQGNILGNVMKQLHDKSRNLNYNRHKSLPFVGEVSGA--NMDLTTWRHTV-DLT 455

Query: 306 KQQ 314
           KQ+
Sbjct: 456 KQE 458


>03_02_0584 -
           9650996-9651488,9651630-9652049,9652129-9652158,
           9652201-9652287,9652657-9653669,9653832-9654854,
           9654946-9654969
          Length = 1029

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = +3

Query: 153 KNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRK 332
           +NN  L   L  + +N S N   N   VA  S  T   +         DVEK+QPLE + 
Sbjct: 318 ENNAGLNLSLFGKHINESEN---NAPNVAVRSEPTKEPEEQSQRHVQNDVEKEQPLESQS 374

Query: 333 ARL 341
             L
Sbjct: 375 VGL 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,917,029
Number of Sequences: 37544
Number of extensions: 294876
Number of successful extensions: 710
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)