Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_C19
(721 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002331-1|AAH02331.1| 166|Homo sapiens chromosome 11 open read... 126 6e-29
AK000494-1|BAA91204.1| 166|Homo sapiens protein ( Homo sapiens ... 126 6e-29
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr... 31 4.1
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr... 31 4.1
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein. 31 4.1
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr... 31 4.1
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr... 31 4.1
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p... 31 4.1
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr... 31 4.1
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late... 30 9.6
>BC002331-1|AAH02331.1| 166|Homo sapiens chromosome 11 open reading
frame 79 protein.
Length = 166
Score = 126 bits (305), Expect = 6e-29
Identities = 61/120 (50%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Frame = +3
Query: 246 SNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYXSRKRGMLXNDLLLSTFAKKYLNGFN 425
S T + D + +P + + +E ++ARL Y SRKRGML N +LLS FAK++L
Sbjct: 39 SPTDSQKDMIEIPLPPWQERTDESIETKRARLLYESRKRGMLENCILLSLFAKEHLQHMT 98
Query: 426 EKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDK-IALRQPDL 602
EKQ +YDRLIN PSNDWDI+YW E KP P+ F+NE+M LL+ AKN++K LR PDL
Sbjct: 99 EKQLNLYDRLINEPSNDWDIYYWATEAKPAPEIFENEVMALLRDFAKNKNKEQRLRAPDL 158
>AK000494-1|BAA91204.1| 166|Homo sapiens protein ( Homo sapiens
cDNA FLJ20487 fis, clone KAT08245. ).
Length = 166
Score = 126 bits (305), Expect = 6e-29
Identities = 61/120 (50%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Frame = +3
Query: 246 SNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYXSRKRGMLXNDLLLSTFAKKYLNGFN 425
S T + D + +P + + +E ++ARL Y SRKRGML N +LLS FAK++L
Sbjct: 39 SPTDSQKDMIEIPLPPWQERTDESIETKRARLLYESRKRGMLENCILLSLFAKEHLQHMT 98
Query: 426 EKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDK-IALRQPDL 602
EKQ +YDRLIN PSNDWDI+YW E KP P+ F+NE+M LL+ AKN++K LR PDL
Sbjct: 99 EKQLNLYDRLINEPSNDWDIYYWATEAKPAPEIFENEVMALLRDFAKNKNKEQRLRAPDL 158
>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 4.1
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = +3
Query: 144 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 323
KIDK + + K + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCKKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 324 KRKARLHYXSRKRGMLXNDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 503
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 504 KKPTPKEFDN---EIMNLLKKHAKNEDKI 581
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 4.1
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = +3
Query: 144 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 323
KIDK + + K + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCKKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 324 KRKARLHYXSRKRGMLXNDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 503
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 504 KKPTPKEFDN---EIMNLLKKHAKNEDKI 581
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
Length = 1024
Score = 31.1 bits (67), Expect = 4.1
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = +3
Query: 144 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 323
KIDK + + K + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCKKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 324 KRKARLHYXSRKRGMLXNDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 503
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 504 KKPTPKEFDN---EIMNLLKKHAKNEDKI 581
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 4.1
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = +3
Query: 144 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 323
KIDK + + K + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCKKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 324 KRKARLHYXSRKRGMLXNDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 503
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 504 KKPTPKEFDN---EIMNLLKKHAKNEDKI 581
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 4.1
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = +3
Query: 144 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 323
KIDK + + K + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCKKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 324 KRKARLHYXSRKRGMLXNDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 503
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 504 KKPTPKEFDN---EIMNLLKKHAKNEDKI 581
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 4.1
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = +3
Query: 144 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 323
KIDK + + K + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCKKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 324 KRKARLHYXSRKRGMLXNDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 503
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 504 KKPTPKEFDN---EIMNLLKKHAKNEDKI 581
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 4.1
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = +3
Query: 144 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 323
KIDK + + K + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCKKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 324 KRKARLHYXSRKRGMLXNDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 503
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 504 KKPTPKEFDN---EIMNLLKKHAKNEDKI 581
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
element protein protein.
Length = 1530
Score = 29.9 bits (64), Expect = 9.6
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = +3
Query: 144 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 323
KIDK + + + + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCRKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 324 KRKARLHYXSRKRGMLXNDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 503
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 504 KKPTPKEFDN---EIMNLLKKHAKNEDKI 581
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,115,929
Number of Sequences: 237096
Number of extensions: 1826507
Number of successful extensions: 6901
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6901
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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