Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_C18
         (342 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q55FF5 Cluster: Putative uncharacterized protein; n=1; ...    32   2.9  
UniRef50_A3HAU9 Cluster: Leucine-rich repeat protein; n=1; Pseud...    31   5.0  
UniRef50_Q6NU19 Cluster: MGC81324 protein; n=2; Xenopus|Rep: MGC...    31   6.7  
UniRef50_Q98L03 Cluster: Methylenetetrahydrofolate reductase; n=...    31   6.7  
UniRef50_Q4FMM1 Cluster: ABC transporter; n=2; Candidatus Pelagi...    31   6.7  

>UniRef50_Q55FF5 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1537

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 56  ANLDDPDSEPIRVFDPL-SQSMLEELALIRDVSKYLQKKKIEDV 184
           AN DDP   P  VF P   Q  L+E  L+  + +Y Q K+   V
Sbjct: 473 ANADDPSKPPFAVFSPTKDQEKLQEAILLLLLRQYQQNKEFISV 516


>UniRef50_A3HAU9 Cluster: Leucine-rich repeat protein; n=1;
           Pseudomonas putida GB-1|Rep: Leucine-rich repeat protein
           - Pseudomonas putida (strain GB-1)
          Length = 1489

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 50  FVANLDDPDSEPIRVFDPLSQSMLEELALIRDVSKYLQKKKIED 181
           F+A   +   +P+ +++P     L E A + D  KYL+++ ++D
Sbjct: 278 FIAPTQNRTHDPVFLYNPADGDALREFASLGDARKYLRQQLLQD 321


>UniRef50_Q6NU19 Cluster: MGC81324 protein; n=2; Xenopus|Rep: MGC81324
            protein - Xenopus laevis (African clawed frog)
          Length = 1105

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 15   LNSKSPLEATKXSLPIWTILIQSPYVYSILY---RRVCWKSSPSSEMSVNT 158
            L+ K P       LP  +I+ +SP V S LY    +VC ++SPS  + +NT
Sbjct: 953  LDRKGPALERSKELPAISIIPKSPLVRSGLYLLTTKVCKENSPSLCLPINT 1003


>UniRef50_Q98L03 Cluster: Methylenetetrahydrofolate reductase; n=8;
           Proteobacteria|Rep: Methylenetetrahydrofolate reductase
           - Rhizobium loti (Mesorhizobium loti)
          Length = 363

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +2

Query: 65  DDPDSEPIRVFDPLSQSMLEELALIRDVSKYLQKKKI 175
           D P ++P  VFD  S S+LE + ++RD  K+L  +K+
Sbjct: 138 DQPGAKP--VFDLDSMSLLETIRIMRDNGKFLSGRKL 172


>UniRef50_Q4FMM1 Cluster: ABC transporter; n=2; Candidatus
           Pelagibacter ubique|Rep: ABC transporter - Pelagibacter
           ubique
          Length = 295

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 21  SKSPLEATKXSLPIWTILIQSPYVYSILYRRVCWKSSPSSEMSVN 155
           SK   E    S+ IW ILI  P+VY I      W S PS E +++
Sbjct: 176 SKKKNENVTGSILIWAILILIPFVYFI---EKPWNSIPSIESTIS 217


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,908,884
Number of Sequences: 1657284
Number of extensions: 2920707
Number of successful extensions: 9743
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9741
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10275329640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)