Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_C18
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    25   4.3  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    25   4.3  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   4.3  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    24   7.5  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    24   7.5  

>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 104 LSQSMLEELALIRDVSKYLQKKKIED 181
           L +S+LEE+ ++  + KY Q++KI D
Sbjct: 268 LYESLLEEVPILSSLDKY-QRQKIAD 292


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 96  SILYRRVCWKSSPSSEMSVNTCRRRRLKT*IKL 194
           S++ R+  W+  P+S   +N  ++  LK   KL
Sbjct: 526 SLISRKAVWRMRPASVRQINFLKKSNLKLDEKL 558


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 119 AYSAIEDRIHVW 84
           AYSA ++R+H+W
Sbjct: 128 AYSAAQERLHIW 139


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/51 (23%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 2   VPSTPEFEKPIGSYKXFVANLDDPDSEPIRVFDPLSQSMLEELA-LIRDVS 151
           V STP     + ++K  + N+++  +EP +  DP+ +++  E+  + +D++
Sbjct: 310 VESTPSI---LQNFKVSLVNVENVPNEPFKRQDPVIKAVTSEIMNVFKDIA 357


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 12  RLNSKSPLEATKXSLPIWTILIQSPYVYSILYR 110
           RLNS  P+E T+ +L + ++ IQ   V  +L++
Sbjct: 467 RLNSIRPVEFTEPALGVASLKIQFDAVEILLWK 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 813,098
Number of Sequences: 5004
Number of extensions: 12549
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)