Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_C18
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239... 29 0.72
12_02_1092 - 26011445-26012071,26012826-26014022,26014083-260142... 28 2.2
05_01_0139 + 929343-930188 28 2.2
08_02_0677 - 19947277-19947342,19948121-19948502,19948573-19948925 27 3.9
03_02_0850 + 11775232-11776077,11776761-11777321 27 3.9
02_05_1070 + 33872845-33873726 27 3.9
04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200 27 5.1
04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497 27 5.1
03_06_0257 - 32697469-32697520,32698183-32698301,32698536-326985... 27 5.1
06_01_0813 + 6157734-6157939,6158421-6158488,6158922-6158986,615... 26 8.9
01_06_1589 - 38477318-38477411,38477833-38478863 26 8.9
>12_01_0314 -
2395113-2395760,2396151-2396738,2397218-2397252,
2397546-2397632,2397913-2397985,2398648-2398714,
2398795-2398931,2400196-2400217,2400733-2400807,
2402281-2402365,2402605-2403334
Length = 848
Score = 29.5 bits (63), Expect = 0.72
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 21 SKSPLEATKXSLPIWTILIQSPYVYSILYRRVCWKSSPSS 140
+K + A K +L +W L YV+ ++ +CW SPS+
Sbjct: 735 TKELVRALKWTLCVWVSLCV--YVFILVLAMICWSRSPSA 772
>12_02_1092 -
26011445-26012071,26012826-26014022,26014083-26014286,
26014316-26014385,26014440-26014479,26015566-26015632,
26015718-26015740,26017985-26018081,26018553-26018614,
26018913-26019297,26019924-26020007,26020383-26020467,
26020579-26020790,26020881-26021030
Length = 1100
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 2 VPSTPEFEKPIGSYKXFVANLDDPDSEPIRVFDPLSQSMLEELALIRDVSKYLQKKKI 175
V + +P GSYK +AN + P FD + S L +L + K +K +I
Sbjct: 127 VEAVRSLNEPTGSYKTAIANYIEEQYWPPADFDHVLSSKLNDLTASGKLIKVNRKYRI 184
>05_01_0139 + 929343-930188
Length = 281
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 15 LNSKSPLEATKXSLPIWTILIQSPYVYSILYRRVCWKSSPSSEMSVN 155
+ SPLEA + + + +L+ + V SIL +CW + + +N
Sbjct: 228 MGGASPLEAIQLQIVVMNMLMGASTVSSILSTYLCWPAFFTGAFQLN 274
>08_02_0677 - 19947277-19947342,19948121-19948502,19948573-19948925
Length = 266
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 32 IGSYKXFVANLDDPDSEPIRVFDPLSQSMLEELA 133
+G Y+ ++AN+ D E +RV D + + E A
Sbjct: 75 VGPYRGYIANIPGMDWESLRVHDADDAARVREFA 108
>03_02_0850 + 11775232-11776077,11776761-11777321
Length = 468
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 174 IFFFCKYLLTSLMRASSSSILCDRGSNTRMGSESGSSRLATNXL 43
+FFF YLL + +L RG R+GS AT L
Sbjct: 27 LFFFSWYLLLDSAAVTPEPLLAARGQGLRVGSSGRKCDPATAAL 70
>02_05_1070 + 33872845-33873726
Length = 293
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 74 DSEPIRVFDPLSQSMLEELALIRDV 148
D EP+ + + + ++ EE ALIRDV
Sbjct: 24 DEEPVEIREVWADNLEEEFALIRDV 48
>04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200
Length = 405
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 96 SILYRR--VCWKSSPSSEMSVNTCRRRRLKT*IKL 194
S L+RR + SSP S +N+CR R LK K+
Sbjct: 41 SRLHRRKSFLYTSSPKSGFLINSCRARSLKVKAKM 75
>04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497
Length = 405
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 96 SILYRR--VCWKSSPSSEMSVNTCRRRRLKT*IKL 194
S L+RR + SSP S +N+CR R LK K+
Sbjct: 41 SRLHRRKSFLYTSSPKSGFLINSCRARSLKVKAKM 75
>03_06_0257 -
32697469-32697520,32698183-32698301,32698536-32698556,
32698903-32698979,32699331-32699477,32699561-32699721,
32700320-32700522
Length = 259
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 21 SKSPLEATKXSLPIWTILIQSPYVYSILYRRVCW 122
SK EA++ S+ Q PYV I+ RVC+
Sbjct: 44 SKGQHEASRMSIETGPYFFQYPYVLYIIEGRVCY 77
>06_01_0813 +
6157734-6157939,6158421-6158488,6158922-6158986,
6159517-6159605,6159682-6159862,6159972-6160100,
6160187-6160320,6160424-6160637,6160720-6160904,
6160994-6161089,6161175-6161328
Length = 506
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 104 LSQSMLEELALIRDVSKYLQKKKIEDVN 187
LSQ+ EELA+IR+ + Y + K I+ ++
Sbjct: 279 LSQTESEELAMIRENTSYWKVKDIDPLD 306
>01_06_1589 - 38477318-38477411,38477833-38478863
Length = 374
Score = 25.8 bits (54), Expect = 8.9
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 35 GSYKXFVAN-LDDPDSEPIRVFDPLSQSMLEELALIRDVSKYLQKKKI 175
G+ F+ N L++PD P+RV+D L +E + VS+ + K+
Sbjct: 303 GNRVYFMHNILEEPDGGPLRVYD-LGDGSMETVRPCPGVSELIYSVKV 349
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,188,284
Number of Sequences: 37544
Number of extensions: 79968
Number of successful extensions: 328
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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