Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_C18
         (342 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)                29   0.99 
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)                    26   7.0  
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_50424| Best HMM Match : DUF581 (HMM E-Value=5.1)                    26   9.2  

>SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)
          Length = 639

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 14  PEFEKPIGSYKXFVANLDDPDSEPIRVFDPLSQSMLEELA 133
           P+ E      K  VANLDD D E  +VF+    ++LEE A
Sbjct: 559 PDMENVTDKMKGDVANLDDED-EIAKVFNKTMAAILEEKA 597


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 68   DPDSEPIRVFDPLSQSMLEELA 133
            + D E +R+ DP   S++EELA
Sbjct: 1802 EDDGERVRITDPYDSSVVEELA 1823


>SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)
          Length = 723

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 56  ANLDDPDSEPIRVFDPLSQSMLEELALIRDVSKYLQKKKIED 181
           ++ DD +    +  DP S + +E+ A   DVS+   +KK ED
Sbjct: 100 SSADDTEGSADQDNDPYSSAKVEKRAAAEDVSEDDDEKKDED 141


>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1373

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 125 LPAYSAIEDRIHVWALNQDRPDWQRTLCSFQWAFRIQALTA 3
           LP Y+ + + +H    +Q R +W +   +FQ   RI A  A
Sbjct: 592 LPYYNDMREEVHD-KYSQQREEWWKISVTFQRVLRISAHVA 631


>SB_50424| Best HMM Match : DUF581 (HMM E-Value=5.1)
          Length = 496

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 89  RVFDPLSQSMLEELALIRDVSKYLQKKKIE 178
           RVFDP++ +  + + ++ DV + ++ K +E
Sbjct: 248 RVFDPITSNSSKRIDMVFDVYRKIEIKNVE 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,980,455
Number of Sequences: 59808
Number of extensions: 93558
Number of successful extensions: 236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)