Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_C15
         (511 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000498812 Cluster: ubiquitin carboxyl-terminal hydr...    36   0.71 
UniRef50_Q1ZXL1 Cluster: RNA-binding region-containing protein; ...    32   8.7  

>UniRef50_UPI0000498812 Cluster: ubiquitin carboxyl-terminal
           hydrolase; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
           ubiquitin carboxyl-terminal hydrolase - Entamoeba
           histolytica HM-1:IMSS
          Length = 340

 Score = 35.5 bits (78), Expect = 0.71
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 295 YCKHKKKCLMELNSSSVLSYFCLNISLINKNHI*MYLLCTMKILKNV-IFKPINY 456
           Y K+ K  + ++ +  V+S FC  I  I+  H   + L  + I+KN+  FK +N+
Sbjct: 147 YIKNNKSIITQMTTGIVVSNFCCEICGISSTHSEPFSLLQLPIIKNLSFFKKVNF 201


>UniRef50_Q1ZXL1 Cluster: RNA-binding region-containing protein;
           n=1; Dictyostelium discoideum AX4|Rep: RNA-binding
           region-containing protein - Dictyostelium discoideum AX4
          Length = 737

 Score = 31.9 bits (69), Expect = 8.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 131 HQQHRKGNKNHRFEHFVIYTNHSTKACLINRRDHCRD 21
           HQQ+R    NHR  H   +  H       N+RDH RD
Sbjct: 330 HQQYRDNYNNHRHPHHHNHQPHHHNNHYHNQRDHQRD 366


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,811,991
Number of Sequences: 1657284
Number of extensions: 6515501
Number of successful extensions: 15314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15282
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30946432294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)