Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_C13
         (868 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   1.3  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    24   1.8  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    22   7.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.5  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 289 VAKHVELARVQTLVDFIFHARSIVRHCRVVRMRFSC 182
           V K  E +++Q LVD I H  S    C +     SC
Sbjct: 111 VTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSC 146


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 334 PWRFRCRNSEKRYPW 378
           P RFR  NS+KR+P+
Sbjct: 126 PERFRPENSQKRHPF 140


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 650 ALVIADTRGLFSQVFCDFGPEFTVLDVNGEN 742
           ALV++    L S    D   EF  LD+N +N
Sbjct: 23  ALVMSPANSLASTDIGDVDLEFWDLDLNAQN 53


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 254 SRRFHLPRALHCSPLPSCSNALLLYLVSAFS 162
           SR  H P      P+P  S+  + YLVS +S
Sbjct: 65  SRADHSPVFGKVEPVPHTSSFNMGYLVSPYS 95


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,493
Number of Sequences: 336
Number of extensions: 4132
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23893023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)