Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_C11
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0933 - 7199375-7199402,7199497-7199614,7199705-7199783,720... 131 6e-31
01_01_1129 - 8948612-8950117,8951354-8951503 34 0.12
08_02_1259 - 25676523-25676624,25676726-25676851,25677023-256771... 33 0.22
09_04_0701 + 19583386-19583554,19584290-19584441,19585123-195851... 30 2.0
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 29 4.7
12_01_0784 + 7167051-7167509,7168161-7168276,7168788-7169646 28 8.1
08_02_1429 + 27040293-27040523,27041618-27041739,27042290-270423... 28 8.1
>06_01_0933 -
7199375-7199402,7199497-7199614,7199705-7199783,
7200641-7200842,7200940-7200975,7201912-7202096
Length = 215
Score = 131 bits (317), Expect = 6e-31
Identities = 69/170 (40%), Positives = 96/170 (56%)
Frame = +1
Query: 268 PDHTKLIAMARYVLHSADWASLATISNLPAIEGFPFTNVKSVVDGSLANSTGVPYFYMSP 447
P T+ A AR++ W L+TIS+ + G PF NV S DG S G+PYFY++
Sbjct: 40 PAPTEAAATARWLAAQNTWGVLSTISS--DLSGAPFGNVVSYSDGVPGESHGIPYFYLTT 97
Query: 448 LDFSARDLTKNSRATVLVSLEETKFCEQNNYDPEDPRCTRLMLSGKMKKVKEGSDEYKFA 627
LD +ARD ++ R + +S C DPE+P C +L L+GK+K + S E A
Sbjct: 98 LDPTARDALEDERTSFTLSEFPLGTC--GKIDPENPTCAKLTLTGKLKLIDPQSSEADLA 155
Query: 628 KAALFERHPAMANWPTDHDWFIAKMKIALIAMVDWFGGAKYIPVRDYLAY 777
K ALF +HP M WP +H + I K++I I ++DWFGG K I +YL Y
Sbjct: 156 KEALFTKHPEMEGWPKNHHFQIFKLEIKNIFLIDWFGGPKPISPTEYLEY 205
>01_01_1129 - 8948612-8950117,8951354-8951503
Length = 551
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +1
Query: 511 ETKFCEQNNYDPEDPR-----CTRLMLS-GKMKKVKEGSDEYKFAKAALFERHPAMA 663
+TKFC NNY+ PR C R + G M+ V G+ K ++L RH MA
Sbjct: 177 DTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSSSLHYRHLLMA 233
>08_02_1259 -
25676523-25676624,25676726-25676851,25677023-25677134,
25677294-25677385,25677751-25677828,25677910-25677989,
25678079-25678181,25678274-25678336,25678988-25679194
Length = 320
Score = 33.5 bits (73), Expect = 0.22
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 2/161 (1%)
Frame = +1
Query: 298 RYVLHSADWASLATISN--LPAIEGFPFTNVKSVVDGSLANSTGVPYFYMSPLDFSARDL 471
R ++ A +A L T+ + G+PF S+VD S +S G P F +SPL R+L
Sbjct: 85 RNLMEQARFAHLCTVMSGMHHRRTGYPFG---SLVDFS-NDSMGHPIFSLSPLAIHTRNL 140
Query: 472 TKNSRATVLVSLEETKFCEQNNYDPEDPRCTRLMLSGKMKKVKEGSDEYKFAKAALFERH 651
+ R T++V + R+ + G + + E D+ ++A +H
Sbjct: 141 LSDPRCTLVVQVPGWSGLSN----------ARVTIFGDVYPLPE--DQQEWAHKQYVAKH 188
Query: 652 PAMANWPTDHDWFIAKMKIALIAMVDWFGGAKYIPVRDYLA 774
A+ + ++ I+ I + FG ++ V++Y A
Sbjct: 189 QQWASQQWGNFYYYRMQNISDIYFIGGFGTVAWVDVKEYEA 229
>09_04_0701 +
19583386-19583554,19584290-19584441,19585123-19585181,
19585319-19585344,19585407-19585758,19586184-19586667
Length = 413
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +1
Query: 190 DRRGHQRSWQSRDSANEITSRRRSDP-PDHTKLIAMARYVLHSADWASLATISNLPAIEG 366
+ RGH S I S S+P P T+ + L + + ++ + + A
Sbjct: 273 ETRGHGHGMTSHAVQQTIPSSMASNPQPPATRRVRPR--ALSITSFIAASSSAEIRAPHD 330
Query: 367 FPFTNVKSVVDGSLANSTGVP 429
FP T S +G++ N G P
Sbjct: 331 FPLTETASTTNGNIRNGVGAP 351
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 586 MKKVKEGSDEYKFAKAALFERHPAMANWPTDHDWFIAKMKIA 711
M+K+K+ DE+ F K + + N T H + K K+A
Sbjct: 5 MQKIKDIEDEWSFVKGCILQMARTQKNKATAHHLGLLKAKLA 46
>12_01_0784 + 7167051-7167509,7168161-7168276,7168788-7169646
Length = 477
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 115 DKMKWELIAFSLCCLNLYVDCDWKHDRRGHQRSWQSRDSA 234
D+ W L F L LY+ W++ R H R S + A
Sbjct: 423 DRFYWLLAVFELVAFFLYLYSAWRYTYRHHPRVQPSMEDA 462
>08_02_1429 +
27040293-27040523,27041618-27041739,27042290-27042392,
27042530-27042620,27042851-27043023,27043379-27043467,
27044212-27044319,27044408-27044498,27044708-27044797,
27045587-27045658,27045756-27045849,27045940-27046087,
27046961-27047222
Length = 557
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 289 AMARYVLHSADWASLATISNLPAIEGFPFTNVKSVVD 399
++ RY+ + WAS T++ L + G P T +K +++
Sbjct: 350 SLERYMHYYERWASNQTLAKLTDVFGIPETQLKFIIE 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,958,300
Number of Sequences: 37544
Number of extensions: 486160
Number of successful extensions: 1211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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