Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_C09
         (448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_21950| Best HMM Match : PTN_MK_N (HMM E-Value=4.8)                  28   4.0  
SB_35513| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  27   7.1  
SB_15612| Best HMM Match : Keratin_B2 (HMM E-Value=0.61)               27   7.1  
SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_45326| Best HMM Match : Ank (HMM E-Value=5.2)                       27   9.3  
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35)                    27   9.3  
SB_8542| Best HMM Match : PT (HMM E-Value=4)                           27   9.3  
SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)                 27   9.3  

>SB_29350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +2

Query: 197 NPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAPKY*TVFLILISCITRILVV 373
           N + + N+K +P  W +Y           R +    SP+P Y T+ + +   IT I  +
Sbjct: 81  NDEPNNNEKLDPTFWVSYTPTPLSHRYHHRHHHTSPSPSPPYITITITITITITTITTI 139


>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1263

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +2

Query: 128 PLYVCVGIGCGGAVFYTLRLALRNPDVSW----NKKTNPEPWEAYRNKQYKFYSPIRDYS 295
           P+++ +G+ CG A++ +    LR P V +     KK N + +  ++    +    + DYS
Sbjct: 38  PMFLLIGVICGLAIYNSTIFDLRFPPVLYKKLLRKKPNLDDFRGFQPSVARNLQYLLDYS 97

Query: 296 KEE 304
            ++
Sbjct: 98  DDD 100


>SB_21950| Best HMM Match : PTN_MK_N (HMM E-Value=4.8)
          Length = 406

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 316 GGRRFLLRVVSDGRIELVLLVPVSLPWFRVGLLVP-RYIRITQSQTQSIE 170
           G RR+  RV       L L  P++LP+ R   L P R + + ++  QS E
Sbjct: 93  GPRRYATRVQKHDYARLTLKNPIALPFMRRHQLTPQRIMGVVETVVQSNE 142


>SB_35513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 149 IGCGGAVFYTLRLALRNPDVSWNKKTNPEPWEAY-RNKQYKF 271
           +  G  V++ L +ALR+ D +WN  TNP     Y   K Y F
Sbjct: 8   VRAGFDVYFGLNVALRSKDGTWN-YTNPIELVKYATRKAYNF 48


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 219 RRPTLNHGRLTGTSSTSSILPSETT 293
           +RP L     T T STSS +PSE T
Sbjct: 830 QRPRLGISPTTKTCSTSSFIPSEVT 854


>SB_15612| Best HMM Match : Keratin_B2 (HMM E-Value=0.61)
          Length = 343

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/46 (32%), Positives = 30/46 (65%)
 Frame = +3

Query: 177 LCVWLCVILMYLGTRRPTLNHGRLTGTSSTSSILPSETTLRRNLLP 314
           +CV+  V  +Y+G  RPTL   +L  ++++  +LP+   L+++L+P
Sbjct: 253 VCVFSNVGGVYMGQHRPTLLE-QLVDSTTSQKMLPN-IVLQQHLIP 296


>SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 257 CSCKPPMVQGWSSCSKIHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLR 96
           C  +PP    + S  KI Q + K   +   Q+H I S  I  E S  +A   LR
Sbjct: 255 CYAQPPQNANYYSTEKILQYWQKVMQKKLAQVHRITSFCIQPEISDFFAEVRLR 308


>SB_45326| Best HMM Match : Ank (HMM E-Value=5.2)
          Length = 309

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 103 FEEA*GFDPSVCMCGDRMWWSCV 171
           +E   GFD +V +C   +WW  +
Sbjct: 237 WERESGFDKTVALCRGGLWWDAI 259


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 117 LCFFKLERLSPCILNYLIAL*IRKNCP-QTEYCCRSIGRP 1
           + FFK      C+ ++ I+L + + CP + E  C  I RP
Sbjct: 1   MAFFKRWLAVICVFSFAISLTLCRKCPCKEESLCEPITRP 40


>SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35)
          Length = 473

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 103 FEEA*GFDPSVCMCGDRMWWSCV 171
           +E   GFD +V +C   +WW  +
Sbjct: 421 WERESGFDKTVALCRGGLWWDAI 443


>SB_8542| Best HMM Match : PT (HMM E-Value=4)
          Length = 650

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +2

Query: 197 NPDVSWNKKTNPEPW-EAYRNKQYKFY---SPIRDYSKEESPAPKY 322
           NP   +    NP+PW     N Q K+Y   +P   Y    +P PKY
Sbjct: 170 NPQPKYYPSGNPQPWYYPSGNPQPKYYPSGNPQSRYYPCGNPQPKY 215


>SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1528

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 222  FLFQDTSGLRKARRRV*NTAPPHPIPTHT 136
            ++  D S L+ A     NT PPHP P HT
Sbjct: 988  YIVTDVS-LQSAMSERTNTYPPHPPPIHT 1015


>SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)
          Length = 892

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 185 DAEYRTQLHHILSPHIHTEGSKPYASSN 102
           D+    Q  HI +PH  +EGS  Y+S++
Sbjct: 734 DSRVAAQAIHINAPHTCSEGSSSYSSAS 761


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,896,296
Number of Sequences: 59808
Number of extensions: 271891
Number of successful extensions: 709
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)