Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_C06
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...   151   7e-38
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...   149   3e-37
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    29   0.60 
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   3.2  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    25   5.6  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   7.4  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   7.4  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    25   9.8  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   9.8  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   9.8  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score =  151 bits (366), Expect = 7e-38
 Identities = 68/122 (55%), Positives = 92/122 (75%)
 Frame = +1

Query: 103 IVKXRPHXFXRHQSDRYXKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 282
           I+K R   F RHQSDR+ ++  +WRKP GID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 283 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 462
           NG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++RS
Sbjct: 66  NGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRS 125

Query: 463 QE 468
           QE
Sbjct: 126 QE 127


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score =  149 bits (361), Expect = 3e-37
 Identities = 68/122 (55%), Positives = 91/122 (74%)
 Frame = +1

Query: 103 IVKXRPHXFXRHQSDRYXKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 282
           IVK R   F RHQSD + ++  +WRKP GID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 283 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 462
           NG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++RS
Sbjct: 66  NGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRS 125

Query: 463 QE 468
           QE
Sbjct: 126 QE 127


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 471 ILLGAEASGRIRHSDAELLGSFHDQLPLLRRDTMSDLCAVL 349
           +L  ++   R+ HSD + + +F DQ   +RR  +  LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/66 (16%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 283 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKL--IVERAQQLSIRVTNAAARL 456
           N  R+  +HN++ ++ L+ Q  ++C +    V     ++  ++  A ++ + + ++A   
Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLDVIMEANEVILAIQSSALAY 654

Query: 457 RSQENE 474
           R +  +
Sbjct: 655 RRESQK 660


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 216 QGSILDAQHWLRFQQEDPSYAPKWIP*GPSS 308
           +G  + A+ +LRFQQ+   +  +W+   P S
Sbjct: 175 KGKRMKAKPFLRFQQKYQQFTHRWLEFAPQS 205


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 388 SSKRHHERSLRSTSCFASSRFPAL*H 311
           +S   HER +R    + S+RFP L H
Sbjct: 446 TSNTMHERHIRLLVSYLSNRFPILLH 471


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 213  PPADSVVNTXR--FTPIPL-KFXIAIRLMPXKXMRPXFDDCRPGNRDESQI 70
            P +  V++T R  FT +   +  I + L+P   +   F D +PGN D S++
Sbjct: 1580 PVSKGVIDTSRAHFTNMFFTEIFIPLMLVPLTLVSYFFIDSQPGNPDPSKV 1630


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 134 LXKXCGRFLTIVGLETGMRARLD 66
           L K C  FL+++  E G+RA  D
Sbjct: 272 LNKSCAHFLSVIKSEQGIRAGKD 294


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 229 LMPNIGYGSNKKTRHMLPNGFRKVLVHNVKE 321
           ++ NIGYG+ K +   +    +K  +H++ E
Sbjct: 533 ILYNIGYGNPKASNDEIVEAAKKAKIHDIIE 563


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 355 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 441
           C  + HGV   + K ++ER    +   +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,964
Number of Sequences: 5004
Number of extensions: 34906
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)