Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_C06
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             212   1e-55
SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)                  28   5.8  
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   28   5.8  
SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)                  27   7.7  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  212 bits (518), Expect = 1e-55
 Identities = 97/132 (73%), Positives = 114/132 (86%)
 Frame = +1

Query: 79  LIPVSRPTIVKXRPHXFXRHQSDRYXKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSN 258
           ++PV+RP I+K R   F RHQSDRY ++  +WRKP GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 259 KKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 438
           KKTR ++P+GF+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+VT
Sbjct: 62  KKTRFLMPDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVT 121

Query: 439 NAAARLRSQENE 474
           N+ ARLRS+ENE
Sbjct: 122 NSNARLRSEENE 133


>SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)
          Length = 291

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 259 KKTRHMLPN-GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 435
           K+ +H+L N  F  VLV +++E E    Q ++   EIA  + ++  +L  E ++ L  + 
Sbjct: 93  KQEKHLLYNLEFSPVLVLDLEESEKSAKQEKESDEEIARRLQAEIERLREEGSRLLQEQQ 152

Query: 436 TNAAARLRSQENE 474
               A++R +E +
Sbjct: 153 ELLKAQIREEEQK 165


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 432 SDAELLGSFHDQLPLLRRDTMSDLCAVLPVLHH 334
           S+ E  GSF D++   RRDT S +C    +L H
Sbjct: 300 SETERGGSFLDEVASPRRDTASPVCLWGAILFH 332


>SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)
          Length = 550

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 201 SPQAVQGSILDAQHWLRFQQE 263
           SP+A+QG ++ AQ W   +QE
Sbjct: 151 SPEAIQGFLVSAQEWAIHRQE 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,686,462
Number of Sequences: 59808
Number of extensions: 277105
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)