Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_C03
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.074
SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 31 0.52
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 31 0.69
SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35) 31 0.91
SB_6983| Best HMM Match : rve (HMM E-Value=0.011) 30 1.6
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5) 29 2.1
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_54576| Best HMM Match : Nucleoplasmin (HMM E-Value=2.6) 29 3.7
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 28 4.9
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46) 28 6.4
SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045) 28 6.4
SB_55183| Best HMM Match : SGS (HMM E-Value=1.6) 27 8.5
SB_6304| Best HMM Match : RVT_1 (HMM E-Value=3.2e-18) 27 8.5
SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_46731| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 27 8.5
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 793
Score = 34.3 bits (75), Expect = 0.074
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Frame = +2
Query: 203 QEQGALVNEGREDASIAVQGSSGYTAPDGTPIQITYIAD-----ANGYQPSGAHLPTTPA 367
+ +G++ + S +V GS G +P GTP+ +A A ++ S A LP T A
Sbjct: 492 EREGSIHSSSGHSVSGSVTGSIGERSPVGTPVASPVVAPVMSPLAAAHRASSASLPVTTA 551
Query: 368 --PVPIPDYI 391
P P P Y+
Sbjct: 552 VSPAPEPTYL 561
>SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 299
Score = 31.5 bits (68), Expect = 0.52
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Frame = +2
Query: 257 QGSSGYTAPDGTPIQITYIAD--ANGY-----QPSGAHL--PTTPAPVPIPDYIARAIEY 409
Q S G+T PIQ +Y A + GY P+ AH P T PV P Y A Y
Sbjct: 14 QHSQGFTTVQNPPIQTSYTAPQASTGYAVQGTAPTAAHYGPPQTQRPVVQPAYSAGTTAY 73
Query: 410 IRTHP 424
++ P
Sbjct: 74 AQSAP 78
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 31.1 bits (67), Expect = 0.69
Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +1
Query: 253 RPRFKRLHCP*WYSHSDHLHC*RQRIPAFGCPSAHYPSPCPN-PRLHRPGHRVHQN 417
RPR H P S H HC R R+ PS H CP HR +H N
Sbjct: 236 RPRLSNHHRP-----SRHHHCHRPRLSNHHRPSRHLHCHCPRLSNHHRLSRHLHSN 286
>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
Length = 850
Score = 30.7 bits (66), Expect = 0.91
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 541 YCETRHINDRQCYGLRCFNNS 479
+C+ +N R CYG+RC+N +
Sbjct: 438 HCDLAMMNGRTCYGVRCYNKT 458
>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
Length = 251
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 342 VPICPLPQPLSQSQITSPGPSSTSELTHPSQRSANVFKLY 461
+P +P PL+Q ++ SP PS + PSQ+ + F Y
Sbjct: 214 IPTLVVPSPLTQPEVESPTPSCIEQ--QPSQQYSRGFYTY 251
>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 297 FRXXXXXXXXXXXXRVPICPLPQPLSQSQITSPGPSSTSELTHPSQRSA 443
FR +P+ +P P+S +Q T P P TS T P+ R++
Sbjct: 377 FRQQAAKEQKAASTSMPVKKVPAPVSPAQPTPPSPGPTSP-TSPNGRAS 424
>SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)
Length = 279
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 246 PSPSKVQAA-TLPLMVLPFRXXXXXXXXXXXXRVPICPLPQPLSQSQITSPGPSSTSELT 422
P+PSK + L + + FR + P P SQ+ +SP PSS+S +
Sbjct: 60 PTPSKTNSFDVLTMTKVVFRTMRVSQTRSSSSSQSLPPPPSLSSQTSSSSPPPSSSSSQS 119
Query: 423 HPSQRSAN 446
P S++
Sbjct: 120 LPPPPSSS 127
>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.1 bits (62), Expect = 2.8
Identities = 32/95 (33%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Frame = +1
Query: 205 GTRSARKRGP*GCIHRRPRFKRLHCP*WYSHSDHLHC*RQRIPAFGCPSAHYPSPCPNPR 384
G R A GP R R RLH + LH R R+ P H PR
Sbjct: 142 GAREACAIGPYPLSRRHTRRPRLH-----TRRPRLHRRRTRLHTRR-PRLH----TRRPR 191
Query: 385 LHRPGHRVHQNSPTQARGRPTY----LSYMIVDKD 477
LHR R+H P + R RP L Y VD D
Sbjct: 192 LHRRRPRLHTRRPRRHRRRPRLHRHDLDYTDVDLD 226
>SB_54576| Best HMM Match : Nucleoplasmin (HMM E-Value=2.6)
Length = 281
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 361 PSPCPNPRLHRPGHRVHQNSPTQARGRPTYLSYMIVDKDD 480
P+P P P HR GH V + P + + S+ D++D
Sbjct: 93 PTPTPAPNTHRTGHPVFRRRPWYNGKKRSAASWEEDDEED 132
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 235 TALVYERSLFLATDSVAGLILVLVFVRENVSILRHNL 125
T L+ R+L + ++ L L+ +R N+ ILRHNL
Sbjct: 583 TLLILRRNLLILRHNLLILRHNLIILRRNLLILRHNL 619
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +2
Query: 200 GQEQGALVNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGA----HL-PTTP 364
GQ + + +N+ R+ + Q G DG ++T + G QP H+ PTTP
Sbjct: 351 GQARPSYMNKRRQYPAQGGQPGYGAMPLDGPMGRLT-VQQPVGVQPVSLMDQRHIVPTTP 409
Query: 365 APVPIPDYIARAIEYIRTHPPKPEVGQRI 451
P P AR++ + +P E+ I
Sbjct: 410 IEHPAPPLNARSLLHFECYPRNQELTDEI 438
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 319 RQRIPAFGCPSAHYPSPCP 375
RQR+P+ G P HYPS P
Sbjct: 508 RQRMPSQGPPQVHYPSQDP 526
>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = +2
Query: 185 SNGISGQEQGALVNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTP 364
S+ + Q A + IA + P+GTP+ + + D +PS + +
Sbjct: 122 SSATASSSQAAQPTRQTQPIDIASRVQPSAPTPEGTPVLVQSLPDVE--EPSASARSSAE 179
Query: 365 APVPIPD 385
P P+P+
Sbjct: 180 QPPPLPE 186
>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
Length = 1266
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 185 WSDIGTGICPGKRQHLATQFGHQ 117
W+ GT CPG++ L Q GH+
Sbjct: 857 WNAFGTHTCPGEQLCLVGQLGHR 879
>SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)
Length = 514
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +2
Query: 221 VNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPVPIPDYIARA 400
++ G A+ +G+ T P G P Q Y P G H TTP P +Y +
Sbjct: 425 LHPGDTHATTTPRGTHATTTPRGVPTQQLY--------PGGTHATTTPRRYPRNNY-TQG 475
Query: 401 IEYIRTHP 424
+ + HP
Sbjct: 476 VPTQQLHP 483
>SB_55183| Best HMM Match : SGS (HMM E-Value=1.6)
Length = 242
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 421 VSSDVLDGPGDVIWDWDRGWGSGQMGTRRLVSVGVSNVSDLNGSTIRGSV 272
++ D+ GD WD++R G +G R + + DLN I G++
Sbjct: 4 ITGDMNAKVGDQNWDYERVMGKHGLGVRNDNGERLCELCDLNELVITGTL 53
>SB_6304| Best HMM Match : RVT_1 (HMM E-Value=3.2e-18)
Length = 404
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 421 VSSDVLDGPGDVIWDWDRGWGSGQMGTRRLVSVGVSNVSDLNGSTIRGSV 272
++ D+ GD WD++R G +G R + + DLN I G++
Sbjct: 4 ITGDMNAKVGDQNWDYERVMGKHGLGVRNDNGERLCELCDLNELVITGTL 53
>SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 331 PAFGCPSAHYPSPCPNPRLHRPGHRVHQNSPTQARGRPT 447
P+F + +YP P P+ PG VH P G P+
Sbjct: 128 PSFATTTINYPPP--GPQAPPPGSTVHYPPPQTTMGYPS 164
>SB_46731| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 519
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 421 VSSDVLDGPGDVIWDWDRGWGSGQMGTRRLVSVGVSNVSDLNGSTIRGSV 272
++ D+ GD WD++R G +G R + + DLN I G++
Sbjct: 52 ITGDMNAKVGDQNWDYERVMGKHGLGVRNDNGERLCELCDLNELVITGTL 101
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +2
Query: 110 GEADAQIVSQD----ADVFPDKYQYQYQTSNGISGQE 208
G+ +AQ + DV P+ Y Y+T G+ GQE
Sbjct: 1144 GQGEAQYADDEWDYVEDVVPEAETYGYETYQGVEGQE 1180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,318,190
Number of Sequences: 59808
Number of extensions: 472327
Number of successful extensions: 1502
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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