Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_B17
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch... 178 7e-46
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 61 2e-10
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 30 0.47
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 30 0.47
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ... 29 1.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 28 1.9
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 27 3.3
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 4.4
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 4.4
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom... 27 4.4
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 26 5.8
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 26 7.6
>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 469
Score = 178 bits (434), Expect = 7e-46
Identities = 88/173 (50%), Positives = 117/173 (67%), Gaps = 4/173 (2%)
Frame = +1
Query: 292 LNRFYSAT--SYTKIPRVCIVGAGPAGFYAAMHLTKNI-QCKIDLIEKLPVPFGLIRYGV 462
L+RF T + T P V I+G+GPA FY A L +N KID+ E PVPFGL+RYGV
Sbjct: 2 LSRFIKRTYSTQTSSPVVGIIGSGPAAFYTAHRLLRNDPNVKIDMFESRPVPFGLVRYGV 61
Query: 463 APDHPEVKNVINQFTKVAQRPEVNFYGNVTLGKDITLNQLRQHYDAVLLTYGAEKDKTLG 642
APDHPEVK+V ++F+++A+ + F GNV +G D++L L ++YD ++L YGA DK LG
Sbjct: 62 APDHPEVKHVEHKFSEIAESTQFRFLGNVNVGTDVSLRDLTKNYDCLVLAYGAAGDKRLG 121
Query: 643 IENENAKNVIGARHFVGWYNGLPSNKDLEIDLS-CDTAAILGQGNVXLDVARI 798
I E+ V AR VGWYN P N++LE+DLS + A ++G GNV LDVARI
Sbjct: 122 IPGEDLSGVYSAREVVGWYNSDPRNQNLELDLSQVEDAVVIGHGNVSLDVARI 174
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 61.3 bits (142), Expect = 2e-10
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Frame = +1
Query: 334 RVCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPVPFGLIRYGVAPDHPEVKNVINQFTKV 513
RV I+G+GPAG AA L + + + E+ P GL++YG+ P+ K V+ + ++
Sbjct: 1757 RVAIIGSGPAGLAAADQLNR-AGHHVVIYERADRPGGLLQYGI-PNMKLDKKVVERRIQL 1814
Query: 514 AQRPEVNFYGNVTLGK--DITLNQLRQHYDAVLLTYGAEKDKTLGIENENAKNVIGARHF 687
+ NV +GK D++L++L + YDAV+L G+ + L I N ++K + A F
Sbjct: 1815 MIDEGIEVLTNVEVGKNGDVSLDELHKVYDAVVLASGSTVPRDLPIPNRDSKGIHFAMEF 1874
Query: 688 V 690
+
Sbjct: 1875 L 1875
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 29.9 bits (64), Expect = 0.47
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Frame = +1
Query: 337 VCIVGAGPAGFYAAMHLTK-----NIQCKIDLIEKLPVP 438
VCIVGAGPAG AA+ + + N ++ ++EK P
Sbjct: 93 VCIVGAGPAGLSAAIRIKQQAAKANRDIRVVVLEKAAEP 131
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 29.9 bits (64), Expect = 0.47
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 337 VCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPVP 438
V IVGAG G AA+ LTK I ++++ P P
Sbjct: 7 VIIVGAGVFGLSAALELTKRGGYTIKILDRAPPP 40
>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 226
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 559 KDITLNQLRQHYDAVLLTYGA-EKDKTLGIENENAKNVIGARHFVGW 696
KD+ + + Y+ V+ G +KDK + +++ N++GAR F GW
Sbjct: 143 KDLIAKPMPEMYERVMREAGVTDKDKCIFVDDSYG-NILGAREF-GW 187
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +1
Query: 349 GAGPAGFYAAMHLTKNIQCKIDLIEKLPVPFGLIRYGVAPDHPEVKNVINQFTKVAQRPE 528
GAG + L +N+Q + ++PV L R G DHP VKN+I +
Sbjct: 349 GAGSSLLENPGRLLRNLQGMDAVSGQIPVTVKL-RMGNKDDHPVVKNLIGRIFNETNTSA 407
Query: 529 VNFYG 543
+G
Sbjct: 408 ATLHG 412
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 27.1 bits (57), Expect = 3.3
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Frame = +1
Query: 331 PRVCIVGAGPAGFYAAMHL-TKNIQCKIDLIEKL-PVPFGLIRYGVAPDHPEVKNVINQF 504
P VCI+G G AA +L KN + KI + + VP+ + + H ++ + +
Sbjct: 158 PHVCIIGGGKGASVAAEYLREKNFKGKITIFTREDEVPYDRPKLSKSLLH-DISKLALRS 216
Query: 505 TKVAQRPEVNFYGNVTLGK-DITLNQL--------RQHYDAVLLTYGAEKDKTLGIENEN 657
+ +++F+ N + K D+ ++ + Y ++L G E +K L I +
Sbjct: 217 KEYYDDLDISFHFNTDVTKIDLAEKKIYCGSDEKPTESYTKLILATGGEPNK-LPIPGLD 275
Query: 658 AKNV 669
+KNV
Sbjct: 276 SKNV 279
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 454 YGVAPDHPEVKNVINQFTKVAQRPEVNFYGNVTLGKDITLNQLR 585
+ A H EV + ++FT+ + P++ +V + DI L++ R
Sbjct: 201 FASADSHSEVARLADEFTRDSGLPDLENLSHVNVLLDIALDKFR 244
>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Frame = -3
Query: 686 KCLAPITFLAFSF-----SIPRVLSFSAP 615
K L ITFL FSF +P VLSFSAP
Sbjct: 57 KPLQIITFLFFSFLTSFNDLPYVLSFSAP 85
>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
Trr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 334 RVCIVGAGPAGFYAAMHLTK 393
+V I+G+GPAG AA++L +
Sbjct: 5 KVVIIGSGPAGHTAAIYLAR 24
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 241 NESDKI*NKMTFGSLKTLNRFYSATSYTKIPRVCIVG 351
+E+DK+ + + F L+TLNR TS +K IVG
Sbjct: 388 SEADKLNSNLLF-KLQTLNRNIKVTSQSKDSLTSIVG 423
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 328 IPRVCIVGAGPAGFYAAMH-LTKNIQCKIDLIEKLPVPFGLIRY 456
I ++ I+GAGP+G A L + ++ L E+ P G+ Y
Sbjct: 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,381,667
Number of Sequences: 5004
Number of extensions: 70505
Number of successful extensions: 184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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