Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_B14
         (807 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.2  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    23   2.2  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   2.2  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 652 LXEIAMPQNGIYHVGITALSEAFKHNPAL-NHL 747
           L  I +  N I HVG   +   F H P   NHL
Sbjct: 674 LFHIVIGMNLIIHVGTQLIYRPFSHFPRCGNHL 706


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 298 WLS*VQGVILRPWRSPGRPSHP 233
           WLS   G +     SPG PSHP
Sbjct: 106 WLSSPSGNVPPLTPSPGPPSHP 127


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 142 LEIFQKNRHRFPAVRAHQALCLMNLXRKWP-FYS*W 38
           L++ + NR  F       +L  +NL ++WP F   W
Sbjct: 81  LDLLEANRLFFFLTGVMASLLFLNLAKRWPKFVKDW 116



 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 605 MTVPPRWPKFFRKW 646
           + +  RWPKF + W
Sbjct: 103 LNLAKRWPKFVKDW 116


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 142 LEIFQKNRHRFPAVRAHQALCLMNLXRKWP-FYS*W 38
           L++ + NR  F       +L  +NL ++WP F   W
Sbjct: 81  LDLLEANRLFFFLTGVMASLLFLNLAKRWPKFVKDW 116



 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 605 MTVPPRWPKFFRKW 646
           + +  RWPKF + W
Sbjct: 103 LNLAKRWPKFVKDW 116


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,778
Number of Sequences: 336
Number of extensions: 3876
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)