Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_B14
(807 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 97 2e-21
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 28 1.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 27 3.1
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 27 4.1
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 26 5.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 9.6
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 97.5 bits (232), Expect = 2e-21
Identities = 75/221 (33%), Positives = 103/221 (46%), Gaps = 9/221 (4%)
Frame = +1
Query: 130 GKSLKLD--TAKXAQQIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARF 303
GKSLKLD T + + + + + +++ + L+GNT+G AA+ +S+ + S +L+IA F
Sbjct: 8 GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 67
Query: 304 SDMFTGRMKTEIPPALSALGDGMIAAGARLXVLDLSDNAFGPIGVEGLAKLLQSDVCSD- 480
SD+FTGR+K EIP AL L ++ +L + LSDNAFGP E L L +
Sbjct: 68 SDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 126
Query: 481 ---XXXXXXXXXXXXITGGXXXXXXXXXXXXXXXV--FIAGRNRLENDGATALAKVFQEM 645
I + I GRNRLEN AK FQ
Sbjct: 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186
Query: 646 GSLXEIAMPQNGIYHVGIT-ALSEAFKHNPALNHLNLNDNT 765
L + M QNGI GI L E + L L+L DNT
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 652 LXEIAMPQNGIYHVGITALSEAFKHNPALNHLNLND 759
L + + N H+G +AL+ A K P L L LND
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 391 LXVLDLSDNAFGPIGVEGLAKLLQS 465
L VLDL DN F +G LA L+S
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKS 242
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 558 EAETTGLHSREES--FGE*RCHRAGQSFSGNGFLXRDSYATERYIPCRYNGS 707
+A+ G+++++ S F E C RA G RD YA+ + RYN S
Sbjct: 755 KAKEKGINAKQASQEFYENTCMRAVNQSIGRAIRHRDDYASIILLDSRYNRS 806
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = -2
Query: 470 TSLCSSLARPSTPIGPNALSLRSSTXKRAPAAIMPSPKALKAGGISVFILPVNMSENLAI 291
+S SS + P+T P++ S S T + S L +S ILP + S ++I
Sbjct: 100 SSPVSSYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSI 159
Query: 290 LSSGCDS 270
SS S
Sbjct: 160 SSSSLSS 166
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 623 SAVAPSFSKRFLPAMKTRSL-RFLLESARANNLPPVMPRPL 504
SA AP K +PA+ + R ESA A+NLPP PL
Sbjct: 130 SAEAPISVKSSIPAIPRVTFERLCYESAIASNLPPNALSPL 170
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = -2
Query: 722 LNASDRAVIPTWYIPFCGIAISXKEPIS*KTLASAVAPSFSKRFLPAMKTRS 567
+N SD P W P G+ I + S PS+S PA S
Sbjct: 27 VNESDPKAKPQWECPVRGLTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAAS 78
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 52 MATFXLNSLNTVLDAPAQPETGVDFSGKSLKLDTAKXAQQIVDAINKCPN 201
M F S+ LD A P+TG+D + D Q ++D K N
Sbjct: 99 MEAFRNESIYVFLDL-ANPKTGIDRDTPTWNTDQFSSYQSVIDTFQKYNN 147
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 9.6
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Frame = -2
Query: 404 SSTXKRAPAAIMPSPKALKAGGISVFILPVNMSENLAILSSGCDSKALEIAWAAVTPSVL 225
SST +P+A + S A +S + S N IL++ +S A+ + + S+
Sbjct: 164 SSTPVFSPSASVSSKVASSVSYVSSEPSDSSSSTNTVILTTSVNSPAVSSSETLTSVSIT 223
Query: 224 PVNARYWRFGHLLIASTICCAXFAVSNFR-------DFPEKSTPVSGCAGASSTVFNE 72
+ Y + AST + VS D P + +S A +SS+ E
Sbjct: 224 STESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPASSSSSYLVE 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,670
Number of Sequences: 5004
Number of extensions: 61968
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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