Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_B14
(807 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 173 9e-44
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 173 9e-44
Z81527-6|CAB04275.1| 739|Caenorhabditis elegans Hypothetical pr... 33 0.18
AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf (tbp-asso... 30 2.2
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 29 3.9
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 29 3.9
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 29 3.9
U55363-2|AAA97961.3| 357|Caenorhabditis elegans Serpentine rece... 29 5.2
Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81101-5|CAB03199.3| 705|Caenorhabditis elegans Hypothetical pr... 28 6.8
AB125702-1|BAD01496.1| 705|Caenorhabditis elegans D2-like dopam... 28 6.8
AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopam... 28 6.8
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho... 28 9.0
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi... 28 9.0
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with ran
(nuclear import/export) function protein 2, isoform b
protein.
Length = 926
Score = 173 bits (422), Expect = 9e-44
Identities = 102/226 (45%), Positives = 126/226 (55%), Gaps = 10/226 (4%)
Frame = +1
Query: 118 VDFSGKSLKLDTAKXAQQIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIA 297
V F KSLKLDTA+ A+ +V I +++ L L GNTLG+ A I+KALESHPEL+
Sbjct: 413 VSFLDKSLKLDTAESAEPVVKVIAAASSMKALELRGNTLGIAAGNVIAKALESHPELERC 472
Query: 298 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLXVLDLSDNAFGPIGVEGLAKLLQSDVCS 477
+SD+FTGR+K EIPP L ALG M+ AG ++ LDLSDNAFGPIG + L LL+S
Sbjct: 473 LWSDLFTGRLKNEIPPILEALGKAMMTAGCKIKELDLSDNAFGPIGADALKDLLESPSSF 532
Query: 478 DXXXXXXXXXXXXITGGXXXXXXXXXXXXXXXV----------FIAGRNRLENDGATALA 627
I G V FIAGRNRLEN GA ALA
Sbjct: 533 SLEVLKLNNNGLGIGGKQIAKSLTECLRKSIAVGGENRLRLKTFIAGRNRLENPGAHALA 592
Query: 628 KVFQEMGSLXEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNT 765
F+ + ++ + QNGI+ GI AL A KHN L +L L DNT
Sbjct: 593 ATFKALETVEWFDVRQNGIHEEGIRALVAALKHNRNLRYLWLEDNT 638
Score = 150 bits (363), Expect = 1e-36
Identities = 89/223 (39%), Positives = 119/223 (53%), Gaps = 8/223 (3%)
Frame = +1
Query: 118 VDFSGKSLKLDTAKXAQQIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIA 297
+ F GK LKLDT + +++D I K NL+ L GNTL V A + I+++L++ ELK
Sbjct: 7 LSFFGKQLKLDTEEEISKVIDQIRKHLNLEVLDFRGNTLSVLAGKLIAESLKTRRELKEC 66
Query: 298 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLXVLDLSDNAFGPIGVEGLAKLLQSDVCS 477
+SDMFTGR+K EIP L ALG+ + A+G RL LDLSDNAFG L LQS
Sbjct: 67 IWSDMFTGRLKDEIPLVLDALGEALTASGCRLTTLDLSDNAFGAGLSTSLYNFLQSPALY 126
Query: 478 DXXXXXXXXXXXXITG--------GXXXXXXXXXXXXXXXVFIAGRNRLENDGATALAKV 633
+ G F+ GRNRLE + AL+
Sbjct: 127 SLENLILNNNGLGLAGKTVGKALCSLIDASKKAGTPLKLKKFVCGRNRLEVESTIALSDA 186
Query: 634 FQEMGSLXEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDN 762
F ++G+L EI +PQNGI GI AL+EAF+ N L +++NDN
Sbjct: 187 FIKLGTLEEIRLPQNGIRDDGIIALAEAFRMNKKLRIIDINDN 229
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +1
Query: 172 IVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSD 309
+V A+ NL+YL L NT+ A+A++K LES P+L++ SD
Sbjct: 619 LVAALKHNRNLRYLWLEDNTVLPKGAKALAKTLESWPKLEVLNLSD 664
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with ran
(nuclear import/export) function protein 2, isoform a
protein.
Length = 960
Score = 173 bits (422), Expect = 9e-44
Identities = 102/226 (45%), Positives = 126/226 (55%), Gaps = 10/226 (4%)
Frame = +1
Query: 118 VDFSGKSLKLDTAKXAQQIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIA 297
V F KSLKLDTA+ A+ +V I +++ L L GNTLG+ A I+KALESHPEL+
Sbjct: 450 VSFLDKSLKLDTAESAEPVVKVIAAASSMKALELRGNTLGIAAGNVIAKALESHPELERC 509
Query: 298 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLXVLDLSDNAFGPIGVEGLAKLLQSDVCS 477
+SD+FTGR+K EIPP L ALG M+ AG ++ LDLSDNAFGPIG + L LL+S
Sbjct: 510 LWSDLFTGRLKNEIPPILEALGKAMMTAGCKIKELDLSDNAFGPIGADALKDLLESPSSF 569
Query: 478 DXXXXXXXXXXXXITGGXXXXXXXXXXXXXXXV----------FIAGRNRLENDGATALA 627
I G V FIAGRNRLEN GA ALA
Sbjct: 570 SLEVLKLNNNGLGIGGKQIAKSLTECLRKSIAVGGENRLRLKTFIAGRNRLENPGAHALA 629
Query: 628 KVFQEMGSLXEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNT 765
F+ + ++ + QNGI+ GI AL A KHN L +L L DNT
Sbjct: 630 ATFKALETVEWFDVRQNGIHEEGIRALVAALKHNRNLRYLWLEDNT 675
Score = 150 bits (363), Expect = 1e-36
Identities = 89/223 (39%), Positives = 119/223 (53%), Gaps = 8/223 (3%)
Frame = +1
Query: 118 VDFSGKSLKLDTAKXAQQIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIA 297
+ F GK LKLDT + +++D I K NL+ L GNTL V A + I+++L++ ELK
Sbjct: 44 LSFFGKQLKLDTEEEISKVIDQIRKHLNLEVLDFRGNTLSVLAGKLIAESLKTRRELKEC 103
Query: 298 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLXVLDLSDNAFGPIGVEGLAKLLQSDVCS 477
+SDMFTGR+K EIP L ALG+ + A+G RL LDLSDNAFG L LQS
Sbjct: 104 IWSDMFTGRLKDEIPLVLDALGEALTASGCRLTTLDLSDNAFGAGLSTSLYNFLQSPALY 163
Query: 478 DXXXXXXXXXXXXITG--------GXXXXXXXXXXXXXXXVFIAGRNRLENDGATALAKV 633
+ G F+ GRNRLE + AL+
Sbjct: 164 SLENLILNNNGLGLAGKTVGKALCSLIDASKKAGTPLKLKKFVCGRNRLEVESTIALSDA 223
Query: 634 FQEMGSLXEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDN 762
F ++G+L EI +PQNGI GI AL+EAF+ N L +++NDN
Sbjct: 224 FIKLGTLEEIRLPQNGIRDDGIIALAEAFRMNKKLRIIDINDN 266
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +1
Query: 172 IVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSD 309
+V A+ NL+YL L NT+ A+A++K LES P+L++ SD
Sbjct: 656 LVAALKHNRNLRYLWLEDNTVLPKGAKALAKTLESWPKLEVLNLSD 701
>Z81527-6|CAB04275.1| 739|Caenorhabditis elegans Hypothetical
protein F35E12.7a protein.
Length = 739
Score = 33.5 bits (73), Expect = 0.18
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = -2
Query: 647 PIS*KTLASA-VAPSFSKRFLPAMKTRSLRFLLESARANNLPPVMPRPLLFXXXXXXSEQ 471
PI+ KT S V+ S +K P T + + L A+A++ P P+ Q
Sbjct: 532 PITSKTTTSINVSSSTTKSTRPMQSTTTYQKL---AQASSTASTTPIPIT--------TQ 580
Query: 470 TSLCSSLARPST--PIGPNALSLRSSTXKRAPAAIMPSPKALKA 345
+S+A PST PI P+ ++ RSST K +P I S A A
Sbjct: 581 NISTASIATPSTKTPITPSLITTRSSTTKLSPIVITKSSLAYTA 624
>AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 4
protein.
Length = 523
Score = 29.9 bits (64), Expect = 2.2
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Frame = +1
Query: 73 SLNTVLDAPAQPETGVDFSGKSLKL--DTAKXAQQIVDAINKCPNLQYLALTGNTLGVTA 246
+L VL + AQP + F +L + + V+ +N P Y+ G T G
Sbjct: 152 NLQQVLKSQAQPHL-LPFLQNTLPALRNAVRNGTASVEGVNPPPG--YVFNNGRTPGPPQ 208
Query: 247 AQAISKALESHPELKIARFSDMFTGRMKTEIPPALSALGDGMIAAGARLXVLDLSDNAFG 426
+ + P L++ + + +IPP + G M++ GAR + +
Sbjct: 209 PPPPQQQSQQQPPLEMRQIPN------PNQIPPQMVQGGPHMVSVGARPMIRPMGPGGPS 262
Query: 427 PIGVEG 444
P+G++G
Sbjct: 263 PMGLQG 268
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = -2
Query: 791 MXSAPLAPIVLSFKLRWFSAGLCLNASDRAVIPTWYIPFCGIAISXKEPIS*KTLASAVA 612
+ S+P P L KL W G C S +A+ W IP I + KTL A+
Sbjct: 187 LVSSPYWPQTLDHKLAWECDGNCPTQSHKAI---WEIPIQNIQANDTRWY--KTLTRAMK 241
Query: 611 PSFSKRFLPAMKTRS 567
P S+ + M R+
Sbjct: 242 PFDSRDSVTKMLQRN 256
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = -2
Query: 791 MXSAPLAPIVLSFKLRWFSAGLCLNASDRAVIPTWYIPFCGIAISXKEPIS*KTLASAVA 612
+ S+P P L KL W G C S +A+ W IP I + KTL A+
Sbjct: 2256 LVSSPYWPQTLDHKLAWECDGNCPTQSHKAI---WEIPIQNIQANDTRWY--KTLTRAMK 2310
Query: 611 PSFSKRFLPAMKTRS 567
P S+ + M R+
Sbjct: 2311 PFDSRDSVTKMLQRN 2325
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = -2
Query: 791 MXSAPLAPIVLSFKLRWFSAGLCLNASDRAVIPTWYIPFCGIAISXKEPIS*KTLASAVA 612
+ S+P P L KL W G C S +A+ W IP I + KTL A+
Sbjct: 1128 LVSSPYWPQTLDHKLAWECDGNCPTQSHKAI---WEIPIQNIQANDTRWY--KTLTRAMK 1182
Query: 611 PSFSKRFLPAMKTRS 567
P S+ + M R+
Sbjct: 1183 PFDSRDSVTKMLQRN 1197
>U55363-2|AAA97961.3| 357|Caenorhabditis elegans Serpentine
receptor, class h protein28 protein.
Length = 357
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -2
Query: 233 SVLPVNARYW----RFGHLLIASTICCAXFAVSNF 141
SVLP+ +Y+ RFGHL + T + ++SNF
Sbjct: 133 SVLPITFQYYKLSIRFGHLFVYGTYISSVCSLSNF 167
>Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical
protein K09G1.4b protein.
Length = 840
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 413 SLRSSTXKRAPAAIMPSPKALKAGGISVFILP-VNMSENLAILSSGCDSKALEIA 252
SL ST + P+ I+ S L G+S+ ++P + + NL ++ S +AL+ A
Sbjct: 17 SLDLSTITQTPSTIVGSGIPLNYAGLSLIVIPLITLLGNLLVIISVLRYRALQSA 71
>Z81101-5|CAB03199.3| 705|Caenorhabditis elegans Hypothetical
protein K09G1.4a protein.
Length = 705
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 413 SLRSSTXKRAPAAIMPSPKALKAGGISVFILP-VNMSENLAILSSGCDSKALEIA 252
SL ST + P+ I+ S L G+S+ ++P + + NL ++ S +AL+ A
Sbjct: 17 SLDLSTITQTPSTIVGSGIPLNYAGLSLIVIPLITLLGNLLVIISVLRYRALQSA 71
>AB125702-1|BAD01496.1| 705|Caenorhabditis elegans D2-like dopamine
receptor shortvariant protein.
Length = 705
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 413 SLRSSTXKRAPAAIMPSPKALKAGGISVFILP-VNMSENLAILSSGCDSKALEIA 252
SL ST + P+ I+ S L G+S+ ++P + + NL ++ S +AL+ A
Sbjct: 17 SLDLSTITQTPSTIVGSGIPLNYAGLSLIVIPLITLLGNLLVIISVLRYRALQSA 71
>AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopamine
receptor longvariant protein.
Length = 840
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 413 SLRSSTXKRAPAAIMPSPKALKAGGISVFILP-VNMSENLAILSSGCDSKALEIA 252
SL ST + P+ I+ S L G+S+ ++P + + NL ++ S +AL+ A
Sbjct: 17 SLDLSTITQTPSTIVGSGIPLNYAGLSLIVIPLITLLGNLLVIISVLRYRALQSA 71
>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
homolog protein.
Length = 1257
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 139 LKLDTAKXAQQIVDAINKCPNLQYLALTGNTL 234
LKL+ +K +Q+ D +++C NL++L + N L
Sbjct: 37 LKLNDSKL-EQVPDELSRCANLEHLQMAHNQL 67
>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
flightless) homologprotein 1 protein.
Length = 1257
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 139 LKLDTAKXAQQIVDAINKCPNLQYLALTGNTL 234
LKL+ +K +Q+ D +++C NL++L + N L
Sbjct: 37 LKLNDSKL-EQVPDELSRCANLEHLQMAHNQL 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.133 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,456,303
Number of Sequences: 27780
Number of extensions: 360760
Number of successful extensions: 820
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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