Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_B14
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.7  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    22   7.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 293  ILSSGCDSKALEIAWAAVTPSVLPVNARYWRFGHLLI 183
            I SSG DS +   +W A T S      R  ++G L++
Sbjct: 1066 ITSSGSDSGSSNGSWTAGTVSQQKQKRRMVKYGKLVM 1102


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +1

Query: 673 QNGIYHVGITALSEAFKHNPALNH 744
           +NGIY + ++ ++    ++P L+H
Sbjct: 253 KNGIYGIALSPVTNNLYYSPLLSH 276


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 244  AAQAISKALESHPELKIARFSDMFTGRMKTEIPPALSALG 363
            A++ ++ A       KIA F D FT   K ++     A+G
Sbjct: 1263 ASKIVALAPSVRVPAKIASFDDKFTATYKEDVKLPCLAVG 1302


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 237 CDGRPGDLQGLRITP*TQDSQILGHVYWENEN*DPASFE 353
           CDG+PG    ++ T  T+  + L  V +E  + D   F+
Sbjct: 493 CDGKPGLCDAMKPTKGTELLKYLRKVDFEGLSGDKFKFD 531


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 691 HGIYRSVA*LSLXRNPFPEKLWPARW 614
           HGI+RS   + +   PF E+    +W
Sbjct: 124 HGIFRSSCDIDVEFFPFDEQRCVLKW 149


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 265 PWRSPGRPSHPVYC 224
           PWR+ G P +  YC
Sbjct: 135 PWRTCGNPWNTRYC 148


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 265 PWRSPGRPSHPVYC 224
           PWR+ G P +  YC
Sbjct: 188 PWRTCGNPWNTRYC 201


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +3

Query: 480 PRGASSEQQRP 512
           PRG+S+E+Q+P
Sbjct: 8   PRGSSAEEQQP 18


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +3

Query: 480 PRGASSEQQRP 512
           PRG+S+E+Q+P
Sbjct: 8   PRGSSAEEQQP 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,446
Number of Sequences: 438
Number of extensions: 4219
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)