Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_B13
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   5.8  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   5.8  

>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 300 YRGQHYNQTAQLNPRTPGRRSLRGESKALK 389
           + G  ++ ++Q NP +PG   ++ E  A+K
Sbjct: 144 FPGSSFSASSQQNPSSPGSNDIKSEFAAVK 173


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +3

Query: 561 RGLYPLRSPLDLHRGEADICSSPNTLYFS-NHLLLVSNPFTRTSLRTLSRVY*THIMYLL 737
           R L  LR P  L R EAD C   N   FS + L++ SN     +  +L  V  +      
Sbjct: 597 RPLINLRQPKPLLRSEAD-CIIKNLQNFSTDDLIIKSNEKFTAAKNSLINVIKSGFEQNE 655

Query: 738 XSSPCLLTSNFIGPRLIC 791
             +P  L +N++   L C
Sbjct: 656 FINPYFLQTNYLKNLLCC 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,965
Number of Sequences: 5004
Number of extensions: 67697
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)