Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_B13
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134...    30   2.0  
06_01_1129 + 9326975-9327071,9327174-9327306,9327408-9327479,932...    30   2.0  
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791...    29   4.6  
07_03_1074 - 23766988-23767259,23767342-23767612,23768072-237682...    29   4.6  

>07_03_1389 +
           26212117-26212119,26212721-26212875,26213402-26213479,
           26214211-26214375,26214453-26214554,26214661-26214786,
           26215454-26215490
          Length = 221

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 264 PSEVRTRMRYGGYRGQHYNQTAQLNPR 344
           PSE+R+R R  G RG+ Y+Q    +PR
Sbjct: 124 PSEMRSRDRISGSRGRSYDQRYSRSPR 150


>06_01_1129 +
           9326975-9327071,9327174-9327306,9327408-9327479,
           9327593-9327736,9327950-9328021,9328219-9328278,
           9328384-9328637,9329940-9330281,9332001-9332380,
           9333867-9334235
          Length = 640

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 592 TFTGGKPIYVAALIHYIFLITSYSFLT-PLPELHFEPFHVSIEPILC 729
           T +G  P   A L H +FL  SY+ L+ P+PE     +++   P++C
Sbjct: 155 TLSGPFPSASANLSHLVFLDLSYNNLSGPIPESLARTYNIVGNPLIC 201


>11_02_0062 -
           7909343-7909413,7909509-7910974,7911064-7912088,
           7912300-7912809,7913418-7913441,7913617-7913673
          Length = 1050

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 230 RLVGRALKTTLGPWSRSRGP-VSNTPRTPLARGPRRRFGL 114
           RL G    +T  P   S GP V N P TP  +GPRR F L
Sbjct: 153 RLPGGQADSTSAP---SLGPAVGNEPTTPKGQGPRRGFVL 189


>07_03_1074 -
           23766988-23767259,23767342-23767612,23768072-23768241,
           23768337-23768549,23769896-23770145
          Length = 391

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
 Frame = +2

Query: 50  ILNFSXTXKXXSYVAALFFRA---GGQTFYEVPAPRECAGYLKLARDCETTG-PRLFSGL 217
           + NF  +      ++A F  A    G+TF+ +P  R C G L +    E+ G P L + L
Sbjct: 37  VFNFGDSNSDTGGLSATFGAAPPPNGRTFFGMPVGRYCDGRLVIDFIAESLGLPYLSAYL 96

Query: 218 YPLNDS---PALFAQVSDPLRGQNT 283
             +  +    A FA     +R QNT
Sbjct: 97  NSIGSNFTQGANFATAGSSIRRQNT 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,482,180
Number of Sequences: 37544
Number of extensions: 539435
Number of successful extensions: 1487
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)