Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_B13
         (836 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)              31   1.5  
SB_37757| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_57636| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              28   8.2  

>SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
          Length = 622

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 508 QLAVYR---VPTRQAGCGPAGYSGIPAAPSGRPDG 413
           Q+A+ R    P +Q    P GY G P+AP G P G
Sbjct: 419 QMAILRPKGYPPQQPSYPPGGYGGPPSAPYGAPPG 453


>SB_37757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 368 SKTPSAGRPWVELRRLIVVLTAVTPVPHPCSDLGGDRTLERRVQ 237
           S+T S GRP   +RRL  + T VT   HP   +   + LE R++
Sbjct: 574 SQTDSGGRPQAAIRRLTSIRTPVT--QHPPVHVTHSQDLELRIE 615


>SB_57636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 463 PAGYSGIPAAPSGRPDGLPYRDGR 392
           P G+SG PAAP+  PD L Y D +
Sbjct: 264 PGGHSGAPAAPAIGPDSL-YGDNK 286


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 466  GPAGYSGIPAAPSGRPDGLPYRDGRR 389
            G  GY G PA P GR DG+P   GR+
Sbjct: 1853 GWKGYPGNPAGPPGR-DGIPGPPGRQ 1877


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,885,340
Number of Sequences: 59808
Number of extensions: 578557
Number of successful extensions: 1823
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1822
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)