Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_B13
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    30   1.8  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    30   1.8  
U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter...    30   1.8  
L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.     30   1.8  
Z70682-4|CAA94581.1|  299|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical p...    30   2.3  
Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81050-3|CAB02849.1|  291|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    29   5.4  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    29   5.4  
AL021448-3|CAA16275.1|  291|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen prot...    29   5.4  
L11247-3|AAA28008.1|  278|Caenorhabditis elegans Collagen protei...    28   7.2  

>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
            K04H4.1b protein.
          Length = 1502

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -2

Query: 490  VPTRQAGCGPAGYSGIPAAP--SGRPD--GLPYRDGRRFRAFDS 371
            VP  +  CG  GY G P AP  +G P   GLP   G++ R+ D+
Sbjct: 1096 VPGLEGDCGEDGYPGAPGAPGSNGYPGERGLPGVPGQQGRSGDN 1139


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -2

Query: 490  VPTRQAGCGPAGYSGIPAAP--SGRPD--GLPYRDGRRFRAFDS 371
            VP  +  CG  GY G P AP  +G P   GLP   G++ R+ D+
Sbjct: 1353 VPGLEGDCGEDGYPGAPGAPGSNGYPGERGLPGVPGQQGRSGDN 1396


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -2

Query: 490  VPTRQAGCGPAGYSGIPAAP--SGRPD--GLPYRDGRRFRAFDS 371
            VP  +  CG  GY G P AP  +G P   GLP   G++ R+ D+
Sbjct: 1352 VPGLEGDCGEDGYPGAPGAPGSNGYPGERGLPGVPGQQGRSGDN 1395


>U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 2 protein.
          Length = 380

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 466 GPAGYSGIPAAPSG-RPDGLPYRDG 395
           GP+G SG+PA P    PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150


>L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 466 GPAGYSGIPAAPSG-RPDGLPYRDG 395
           GP+G SG+PA P    PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150


>Z70682-4|CAA94581.1|  299|Caenorhabditis elegans Hypothetical
           protein F08G5.4 protein.
          Length = 299

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -2

Query: 466 GPAGYSGIPAAPSGRPDGLPYRDG 395
           GPAG  G P AP   PDG P +DG
Sbjct: 145 GPAGPDGAPGAPG--PDGQPGQDG 166


>U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical
           protein ZK1248.10 protein.
          Length = 908

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 218 RALKTTLGPWSRSRGPVSNTPRTPLARGPRRRFGLRPEKK 99
           RA++  L  WSRSR   S+ P     +G      L PE+K
Sbjct: 246 RAIRRNLSTWSRSRQNTSDEPVVGSRKGTVSSVDLTPEEK 285


>Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical
           protein E03G2.4 protein.
          Length = 333

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
 Frame = -2

Query: 466 GPAGYSGIPAAP--SGRP--DGLPYRDG 395
           GP G SG+P  P   G+P  DG P RDG
Sbjct: 259 GPPGQSGLPGMPGLQGKPGNDGYPGRDG 286


>Z81050-3|CAB02849.1|  291|Caenorhabditis elegans Hypothetical
           protein C50B6.4 protein.
          Length = 291

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -2

Query: 466 GPAGYSGIPAAP--SGRPDGLPYRDGRR 389
           GPAG +G P AP   G+P G P +DG+R
Sbjct: 172 GPAGDAGAPGAPGQDGQP-GAPGQDGQR 198


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 278 SDLGGDRTLERRVQESRLVGRALKTTLGPWSRSRGPVSNTPRTP-LARGPRRRFGLRP 108
           SD   D  +ER+ + S    R  + +  P  RSR P    PR+P  +R   R+   +P
Sbjct: 142 SDESSDERVERKRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKP 199


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 278 SDLGGDRTLERRVQESRLVGRALKTTLGPWSRSRGPVSNTPRTP-LARGPRRRFGLRP 108
           SD   D  +ER+ + S    R  + +  P  RSR P    PR+P  +R   R+   +P
Sbjct: 142 SDESSDERVERKRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKP 199


>AL021448-3|CAA16275.1|  291|Caenorhabditis elegans Hypothetical
           protein Y2H9A.3 protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 466 GPAGYSGIPAAP--SGRPDGLPYRDGRR 389
           GPAG +G P AP   G+P G P +DG R
Sbjct: 172 GPAGDAGAPGAPGQDGQP-GAPGQDGHR 198


>AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen protein
           69 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 466 GPAGYSGIPAAPSGRP-DGLPYRDGRRFRAFD 374
           GP GY G P  P  R  DG P  +G    A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175


>L11247-3|AAA28008.1|  278|Caenorhabditis elegans Collagen protein
           91 protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -2

Query: 466 GPAGYSGIPAAPSGRP--DGLPYRDGRR 389
           GPAG +G P AP G P  DG P ++G+R
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQR 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,597,270
Number of Sequences: 27780
Number of extensions: 407515
Number of successful extensions: 1268
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)