Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_B08
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)              29   2.2  
SB_10773| Best HMM Match : TatC (HMM E-Value=0.31)                     29   3.8  
SB_49805| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-12)               28   5.0  
SB_53036| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)                 28   6.6  
SB_35918| Best HMM Match : Equine_IAV_S2 (HMM E-Value=0.27)            27   8.8  
SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)                       27   8.8  

>SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)
          Length = 327

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 242 THR*QRDPHSALLTIFCP*IFSILVDVLLTL 150
           +H+ Q DPH+A L++ C  ++S   D L+ +
Sbjct: 139 SHKAQEDPHNAFLSLLCHVVYSAEPDWLMNI 169


>SB_10773| Best HMM Match : TatC (HMM E-Value=0.31)
          Length = 380

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 352 YNAGIFR-QTLVDLDWARNITNAVNVL 429
           YN G+F+ +TL D +W   IT+  NVL
Sbjct: 147 YNLGVFKTKTLEDEEWGLTITSLKNVL 173


>SB_49805| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-12)
          Length = 74

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 381 SRLGLGKKYHQCCKCASCF 437
           +R+  G++ +QCC+C  CF
Sbjct: 10  ARIHSGERPYQCCQCVKCF 28


>SB_53036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -3

Query: 349 TVATNYHHPNIV-TLTVFTLLD 287
           T A N+ HPNIV T T+FT+ D
Sbjct: 86  TSALNFAHPNIVRTFTLFTIQD 107


>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
          Length = 427

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 152 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRG 250
           +S A P ++K  +DK + IKLN G   T  L G
Sbjct: 249 VSHAEPADIKAALDKLVVIKLNGGLGTTMGLVG 281


>SB_35918| Best HMM Match : Equine_IAV_S2 (HMM E-Value=0.27)
          Length = 111

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 94 CILDEFPTHRILSMNLTFLL 35
          CILD +PT+     N+TFLL
Sbjct: 40 CILDHYPTYPFSFENVTFLL 59


>SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)
          Length = 198

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 248 GFDPFMNLVLDESVE 292
           GFD +MNLVLDE+ E
Sbjct: 124 GFDEYMNLVLDEAEE 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,300,794
Number of Sequences: 59808
Number of extensions: 300183
Number of successful extensions: 889
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)