Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_B05
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    46   5e-06
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    27   3.9  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   5.2  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   6.8  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   6.8  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   9.0  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   9.0  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    25   9.0  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   9.0  

>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +1

Query: 439 YEEWFEKLELPDTLASWFSITELHVWLLMVR 531
           +E W++K E+P T  SWF IT+LH+W+L  R
Sbjct: 123 FEFWYQKCEIPMTFQSWFQITQLHLWILHTR 153


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +1

Query: 187 LKETKMLNSRV-IAQVLLQQRH-KIRNICNPGIIKCNKIYREHSTVAAE 327
           L E+K+ NS++   Q L+ +R  +I N+   GI + N+I+R+ ST+  E
Sbjct: 155 LTESKISNSQLEYQQRLINERQGEIENLTQ-GINELNEIFRDLSTIINE 202


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 692 CFFAIDGFAPSNSLI 648
           C+F  D FAPSNSL+
Sbjct: 499 CYFCNDIFAPSNSLV 513


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 336 IAIFSSNCAVFSINLIALDDSRVTNISNFVSLL*QYLGYYS-AVQHFCFFEII 181
           I  FS   +   +N +++    +  I  FVS   QYLG YS + Q F    +I
Sbjct: 60  ICAFSITGSGLEVNTMSIPFYLIFGIFAFVSFTTQYLGIYSFSFQPFQLLNVI 112


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 18/81 (22%), Positives = 34/81 (41%)
 Frame = +1

Query: 394 LTGYFLYESIHANIVYEEWFEKLELPDTLASWFSITELHVWLLMVRYMAEDIAHTAKEKK 573
           L G +    +H  +V +  +EK ++   L      T      L  RYM + + +  +E  
Sbjct: 185 LMGLYAIGILHG-LVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESL 243

Query: 574 TYVKGDGHFVRNCIVEALWAD 636
             +K  G +V    +  L+A+
Sbjct: 244 PTLKSSGQYVSKEDITELFAE 264


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +1

Query: 367 MDQDRTRLKLTGYFLYESIHANIVYEEWFEKLELP---DTLASWFSITELHVWLLMVRYM 537
           + +D+T  ++   F Y+  H  ++ E W     LP    TL +   +T+     ++    
Sbjct: 301 LHKDKTVFQVMNLFNYDQNHKCLIAEGWCPTANLPMVQKTLRNISDLTDSQAPTIL---- 356

Query: 538 AEDIAHTAKEKKTYVK 585
             ++ HT+++  TY +
Sbjct: 357 --NVVHTSEQPPTYFR 370


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 195 NKNAEQPSNSPSIVTTTTQNSKYL 266
           +KN E+P N   I T  T NS+YL
Sbjct: 465 SKNYEKPINLRFISTPGTNNSRYL 488


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 307 HSTVAAEDSYVKKFM--KAVGWMDQDRTRLKL 396
           H  +A++ S  K+ M   A+G  D DRTRL L
Sbjct: 237 HFPLASKTSDTKQLMVAAAIGTRDDDRTRLAL 268


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 129 FTLNKVNFLKSKFINQWKLSQRNKNAEQPSNSPS 230
           F +NK++ + S+ +N+W    RN     P  S S
Sbjct: 199 FVINKIDLVPSEVLNKWVTYLRNFFPTIPMRSAS 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,143
Number of Sequences: 5004
Number of extensions: 64375
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)