Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_B03
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0045 - 7705728-7707581                                           27   5.9  
10_01_0147 - 1722947-1723168,1723268-1723464,1723654-1723690,172...    27   5.9  
07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859...    27   5.9  
09_04_0078 + 14379720-14379786,14379903-14379974,14381093-143814...    26   7.7  
01_03_0213 - 13860284-13860299,13860480-13860537,13860678-13861107     26   7.7  

>11_02_0045 - 7705728-7707581
          Length = 617

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 21  CPAQLPLVKRPHGRWPLLRSHDLEPHVL 104
           CPA L + +RP  RW + R   L  H L
Sbjct: 100 CPAMLQVNRRPSSRWLVSRCVLLHSHPL 127


>10_01_0147 -
           1722947-1723168,1723268-1723464,1723654-1723690,
           1724688-1725584
          Length = 450

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -3

Query: 336 LNRLTVENHIKYXTDLLNI 280
           L++LT+ENH+++  + LN+
Sbjct: 323 LSKLTIENHLQWCPEFLNV 341


>07_03_0316 +
           16684100-16684339,16684425-16685132,16685241-16685939,
           16685992-16686053,16686096-16686368,16686622-16686873,
           16686954-16687064,16687152-16687212,16687312-16687404,
           16687482-16687667
          Length = 894

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 135 NYYTKSISTNRARGARDHGSLIVAIAR 55
           N  +  I   R RGARDHGS +  + R
Sbjct: 560 NRRSTRIGMERPRGARDHGSEVPRVLR 586


>09_04_0078 +
           14379720-14379786,14379903-14379974,14381093-14381497,
           14382835-14382911,14383016-14383135,14383227-14383997,
           14384933-14385146,14385269-14385735
          Length = 730

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 147 IIVGNVTKAILSNEYVFE*VQSVPGHNPARSLSTYPIVCNIG 272
           ++VG  T  + +  +V   + SVPG+   R +  Y + C  G
Sbjct: 77  VVVGANTTVLATRRWVGLEIDSVPGNEGQRDIVNYYLRCATG 118


>01_03_0213 - 13860284-13860299,13860480-13860537,13860678-13861107
          Length = 167

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 117 ISTNRARGARDHGSLIVAIARGVV*PGVVELGISNIG 7
           ++T R     D G + V  A GVV PGV E+G+  +G
Sbjct: 28  MATERVAVVGDPGVVEVKAA-GVVDPGVGEVGVGEVG 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,008,934
Number of Sequences: 37544
Number of extensions: 133081
Number of successful extensions: 236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)