Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_B03
         (359 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59101| Best HMM Match : PT (HMM E-Value=0.026)                      29   1.5  
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   2.6  
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_59101| Best HMM Match : PT (HMM E-Value=0.026)
          Length = 386

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 68  WPSPVGSFNQG*LSWASQTS 9
           WP PVGS N   L W+S  S
Sbjct: 151 WPQPVGSHNPSCLPWSSMPS 170


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 181  DKIALVTLPTIMYFEQLLHQININ**STWGSRSWLLNSGHRPWGRLTRGS 32
            ++ AL  +  I YF   LH       +   +  +L+N  H P GRL R S
Sbjct: 1005 EREALALVTGIRYFSCYLHNKRFEVYTDHAALKYLMNIKHDPTGRLARWS 1054


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 129 YTKSISTNRARGARDHGSLIVAIARGVV*PGVVELGISNIG 7
           YT+S + N   GAR+HG+      R       V  G+S+ G
Sbjct: 195 YTQSYTNNVQTGARNHGNTFTGYPRSYPRTYSVLAGVSSPG 235



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 129 YTKSISTNRARGARDHGSLIVAIARGVV*PGVVELGISNIG 7
           YT+S + N   GAR+HG+      R       V+  +S+ G
Sbjct: 287 YTQSYTNNVQTGARNHGNTFTGYPRSYPRTNSVQAEVSSPG 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,598,038
Number of Sequences: 59808
Number of extensions: 165752
Number of successful extensions: 295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)