Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_B03
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   0.83 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   2.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   2.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   3.3  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 120 IWCSSCSKYIIVGNVTKAILSN 185
           +W SSCS ++ +  +  A+++N
Sbjct: 278 VWMSSCSVFVFLSLMEFAVVNN 299


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 172 ALVTLPTIMYF 140
           AL+TLPTI +F
Sbjct: 327 ALITLPTIFWF 337


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 141 KYIIVGNVTKAILSN 185
           KY ++GN TK I+ N
Sbjct: 449 KYDLIGNGTKLIIKN 463


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 145 YFEQLLHQININ 110
           YFEQ L+++N N
Sbjct: 48  YFEQTLNELNFN 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,875
Number of Sequences: 438
Number of extensions: 1767
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)