Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_A18
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    29   0.050
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   1.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 29.1 bits (62), Expect = 0.050
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 696 NYTFCLVVAKIKFKLRKAVDFNLNNQILVCAL 791
           N T  L V KIK KL + +D NL NQI+   L
Sbjct: 45  NVTDALTV-KIKLKLSQLIDVNLKNQIMTTNL 75


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 714 VVAKIKFKLRKAVDFNLNNQIL 779
           VV K+  +L + +D NL +QIL
Sbjct: 46  VVVKLGLRLSQLIDLNLKDQIL 67


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 525 YISICRYIDVQYFPNG*RKSCLKF 596
           Y S C  IDV+YFP   +   LKF
Sbjct: 149 YKSSCE-IDVEYFPFDEQTCVLKF 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,614
Number of Sequences: 438
Number of extensions: 3724
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)