Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_A17
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 31 0.92
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 31 1.6
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 2.8
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 4.9
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775... 29 4.9
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 4.9
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 29 6.5
06_03_0355 + 19822110-19824491 29 6.5
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 29 6.5
01_07_0126 - 41222916-41222942,41223120-41223190,41223478-412235... 29 6.5
09_04_0276 - 16306894-16307526,16307556-16308572 28 8.6
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 28 8.6
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 31.5 bits (68), Expect = 0.92
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Frame = +2
Query: 122 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQL 301
K L V LKS+++ +++ K+ + E K ++SL +E SSQ
Sbjct: 1426 KKLNDVEASLKSEIDRHRKI---NINIKRKLDASAKEKEELTKEKQSLSKQLEDLKSSQK 1482
Query: 302 KHTETQEKNPLPDKD--------AIEAEKEKNK------------FLNGIENFDPTKLKH 421
TE + + +KD +E E++ NK F I+N + + +
Sbjct: 1483 TTTENSNEQAIKEKDFRIQTLEKVLEKERDDNKKEKAFRRRNEKVFTTAIQNMNQERKQV 1542
Query: 422 TETCEKNPLPTKDVIE 469
E+ EK+ K+VIE
Sbjct: 1543 EESIEKHRQAVKEVIE 1558
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 30.7 bits (66), Expect = 1.6
Identities = 26/90 (28%), Positives = 40/90 (44%)
Frame = +2
Query: 98 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI 277
S S TP+ KDLP L ++ G + + ++ LP++ A + G
Sbjct: 145 SPSPTPT-KDLPCKPVALNARKAG---GAFQPFEKEKRAELPASSTTAAASSTVVGDSGD 200
Query: 278 EKFDSSQLKHTETQEKNPLPDKDAIEAEKE 367
+ D KH ET + N DKDA + +KE
Sbjct: 201 KPTDDDTEKHMETDKDN---DKDAKDKDKE 227
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 2.8
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 146 DLKSQLEGFNTSCLRDVDTNEKIVL 220
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 153 RVSSKASTPAVSVTSTPMKRLCFR 224
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>07_03_0735 +
21075033-21075846,21077065-21077199,21077384-21077517,
21077604-21077814,21078033-21078270,21078346-21078496,
21078593-21078931
Length = 673
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 209 KIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN 328
K VLPS E++A ++ S GIE+ + + + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 108 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 200
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>08_01_0004 +
39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 145 CGDLGEVFQGGSVTHGAGHCESNIFLMRKGIEDSCTQRLC 26
C D +V G+ CE+ R G+ D+C+ R+C
Sbjct: 346 CWDDNKVLLSFENERGSDPCETTECCSRDGVGDNCSSRIC 385
>06_03_0355 + 19822110-19824491
Length = 793
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 185 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTET---QEKNPLPDKDAIE 355
+ +V +++LP+ E+VATE + +E D+ L T +E +P+ D E
Sbjct: 203 VEEVSVTHEVMLPNYEEVATEGDGDTAMAAVEN-DAGSLAETVVMTHEEFVAVPEDDEEE 261
Query: 356 AEKEKNKFLNGI 391
A+ ++ G+
Sbjct: 262 ADGDEENDATGL 273
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 292 EPAEAHRDSGEEPASGQRRYRSGEGKEQ 375
+P A D E +G RR+RSG G++Q
Sbjct: 206 DPRAADDDHAEAARNGVRRWRSGSGQQQ 233
>01_07_0126 -
41222916-41222942,41223120-41223190,41223478-41223560,
41223587-41223653,41223740-41223848,41224431-41224511,
41224671-41224940,41225035-41226510,41226832-41226908,
41227812-41227912,41229397-41229660,41230964-41231136
Length = 932
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 5 RPMSRSPTESLSARIFYPLPHQKYI*FTMACSVS-DTPSLKDLPKVA 142
RP SP+ S+ A P PH + I T + ++S TPSL DLP VA
Sbjct: 37 RPRPPSPSTSVGAAP-QPPPHSQNISSTSSSNISLPTPSL-DLPDVA 81
>09_04_0276 - 16306894-16307526,16307556-16308572
Length = 549
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 741 YTNYLY*IGLWRPLAVYWRKAR 676
+T Y Y LW P YWR+AR
Sbjct: 111 HTTYNYTDILWSPYGAYWRQAR 132
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 28.3 bits (60), Expect = 8.6
Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 4/158 (2%)
Frame = +2
Query: 17 RSPTESLSARIFYPLPH-QKYI*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRD 193
+ PTES ++ YP H Q Y F + + S TP + +L S L CL+D
Sbjct: 398 KGPTESNTSNA-YPHDHNQGYNPFISSTNTSKTPKIDELEDFVMAKPSSLA---NGCLQD 453
Query: 194 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKN 373
++ N + +D +T G D ++LKH++ + A +EK
Sbjct: 454 LNHNG---IGIGQDSSTSAA------GF--MDWAELKHSKGVNQGNFDSLFASSQYQEKE 502
Query: 374 K---FLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEK 478
K + +G+E+ D +L E ++ + +E+++
Sbjct: 503 KAVLYASGMESRDEEELLEHEKKQREKEEEQRKLERDR 540
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,800,338
Number of Sequences: 37544
Number of extensions: 508510
Number of successful extensions: 1492
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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