Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_A13
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    67   3e-12
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    26   5.7  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    26   5.7  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   7.5  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    25   9.9  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   9.9  

>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 30/62 (48%), Positives = 40/62 (64%)
 Frame = +1

Query: 643 VKLENFSTSWADGLAFCALLHHFLPDAFDYSKLTPERRRHNFTLAFKIADXKAGIYPLLD 822
           V +++F+ SW +GLAFCAL+H   PD  DY+KL  +  R N  LAF IA    GI  L++
Sbjct: 144 VDVQDFTRSWTNGLAFCALIHQHRPDLLDYNKLDKKNHRANMQLAFDIAQKSIGIPRLIE 203

Query: 823 VE 828
           VE
Sbjct: 204 VE 205


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 679 GLAFCALLHHFLP 717
           GLA CA+ +HFLP
Sbjct: 408 GLALCAIAYHFLP 420


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 139 VKERDPGL*VNLSGLHFSINANRDSPQQWWQGNQ 240
           +   DP   + +  +H +I+A+RDSP++  Q +Q
Sbjct: 147 ISNSDPEFLMEIMDVHENISASRDSPEKLLQLSQ 180


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 598 VPAAREAKLNKQSQNVKLENFSTSWADGLAFCALL 702
           +P      LNK S++V LE F  S  +    CAL+
Sbjct: 58  IPQLIHLVLNKDSESVALEEFIISQCEQNTQCALI 92


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 670 WADGLAFCALLHHFLPDAFDYSKLTP 747
           W D ++FC   H F+P    Y+   P
Sbjct: 171 WKDKVSFCLWSHRFIPACDRYAPSIP 196


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 642 CKAGELFDELGG-RSRVLRFTTSLPAGRV*LLKTDAGEK 755
           CK  +LF ELG   S ++  T  LP  +V  L+    +K
Sbjct: 504 CKTAKLFKELGSDNSELIAVTNVLPEEQVNFLRWSFDDK 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,539
Number of Sequences: 5004
Number of extensions: 44858
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)