Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_A13
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0073 + 20687057-20687246,20689004-20689203,20689786-206899...    28   7.9  

>09_06_0073 +
           20687057-20687246,20689004-20689203,20689786-20689926,
           20689995-20690075,20690564-20690688,20690763-20690807,
           20691853-20691877,20692282-20693073
          Length = 532

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = -3

Query: 496 RVPPYARCHRNFFFFARFGALPRRLARCLQRFCHRARACFLFGHECADA 350
           R+ P A   R      R  A PRRL R +QR  HRAR  +  G     A
Sbjct: 462 RLYPPASVVRGGRHTPRRHARPRRLVRDVQRIRHRARTAWSTGRSGGSA 510


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,065,787
Number of Sequences: 37544
Number of extensions: 321417
Number of successful extensions: 695
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)