Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_A10
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0896 + 22355097-22355627                                         36   0.038
09_04_0273 + 16292553-16293002                                         36   0.050
01_06_0859 + 32519587-32520039                                         31   1.4  
10_08_0861 - 21139173-21139613                                         30   1.9  
04_03_0802 - 19830614-19831275,19831426-19831507                       29   4.4  
04_03_0119 + 11485753-11486202                                         29   4.4  
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427...    29   5.8  
01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667     28   7.6  

>08_02_0896 + 22355097-22355627
          Length = 176

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 470 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRKHL 619
           M M+F+ G   TILF  W  +    ++ S  A+F+ A LY+ L+  R  L
Sbjct: 2   MHMSFYWGTSVTILFDGWRTSGWPGYLASLLALFLAAALYQHLEARRVRL 51


>09_04_0273 + 16292553-16293002
          Length = 149

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = +2

Query: 470 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRKHLLWKTYAGLQY 649
           M MTF+ G   TILF  W       ++ S  A+ + +  Y+ L+ +R  +  K  AG + 
Sbjct: 2   MHMTFYWGKDVTILFDGWRTATWTGYLLSLVALLLASAFYQYLEAFRIRV--KLLAGAKP 59

Query: 650 CAVAPP 667
            ++ PP
Sbjct: 60  ASIPPP 65


>01_06_0859 + 32519587-32520039
          Length = 150

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 470 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGL 598
           M MTF+ G    ILF+ W     G +  +  A+F +A+L E L
Sbjct: 28  MHMTFYWGKNSEILFTGWPGASGGMYALALAAVFALAVLLEFL 70


>10_08_0861 - 21139173-21139613
          Length = 146

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 314 GVHAQHGPYPYCG-VHDVRPSSTGLRRCTAIKPKKLSTFVNINLNCELR 171
           GV+  HGPY  C  +  +  +   +  CTA+K   L   VN+N+  EL+
Sbjct: 84  GVNVGHGPYDCCPLLAGLADADAAVCLCTAVKANVLG--VNLNVPVELK 130


>04_03_0802 - 19830614-19831275,19831426-19831507
          Length = 247

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 796 PMKYRLPCVCCAHHRR 749
           P+ Y +PC CC H RR
Sbjct: 137 PVPYPVPCKCCPHRRR 152


>04_03_0119 + 11485753-11486202
          Length = 149

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 308 HAQHGPYPYCGVHDVRPSSTGLRRCTAIKP 219
           H++ G YP+C      P S+    CTA+ P
Sbjct: 66  HSRGGMYPWCSSPASPPPSSATSTCTALSP 95


>12_02_0588 -
           20842209-20842337,20842464-20842560,20842620-20842733,
           20843140-20843749,20844739-20845462,20845542-20845620,
           20845783-20845865,20846148-20846226,20846332-20846420,
           20846499-20846591,20847288-20847337,20847417-20847600,
           20849227-20849542,20849626-20849657
          Length = 892

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
 Frame = -2

Query: 482 TSWTCPYCGYC-------DHHGLKKCGHCDHSYLCCAQ 390
           +SW CP C  C       D + L  C  CD +Y C  Q
Sbjct: 183 SSWVCPSCRSCEVCRRPGDPNKLMFCKRCDGAYHCYCQ 220


>01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667
          Length = 569

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 737 QAYEELAVQFVVHLLHKYWQLPCLVVLRHNTVVLHMSS 624
           QA+++  ++  + + H+  Q PC VVL    +V H SS
Sbjct: 463 QAFQQREMEKHMKVFHEPLQCPCGVVLEKEDMVQHQSS 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,581,405
Number of Sequences: 37544
Number of extensions: 516495
Number of successful extensions: 1265
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)