Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_A08
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.46 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.46 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.46 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.1  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   5.6  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   7.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.4  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 550 SSSKQMTSWTPSTYENN-NFGHLSNGSLALFEARNFD 443
           SS++   + TPS   NN NF + SNG+ ++  +  FD
Sbjct: 122 SSTRGNNNNTPSATNNNTNFNNNSNGASSVGSSSPFD 158


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 550 SSSKQMTSWTPSTYENN-NFGHLSNGSLALFEARNFD 443
           SS++   + TPS   NN NF + SNG+ ++  +  FD
Sbjct: 70  SSTRGNNNNTPSATNNNTNFNNNSNGASSVGSSSPFD 106


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 550 SSSKQMTSWTPSTYENN-NFGHLSNGSLALFEARNFD 443
           SS++   + TPS   NN NF + SNG+ ++  +  FD
Sbjct: 253 SSTRGNNNNTPSATNNNTNFNNNSNGASSVGSSSPFD 289


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 193 SPNGSARTQPSPIGSMSATPARVIP 267
           SP+G  R   SP+ S S++P  V P
Sbjct: 168 SPSGFNRASVSPLISSSSSPPGVFP 192



 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +1

Query: 439  NYQSSEPQKAPMNRSTNARNCYSHTSTGSMTSFVWKTNRYMITA 570
            N   S    + +N +TN     + T+ G++ +F W  N  ++T+
Sbjct: 1007 NRTHSATSNSSVNANTNNIPTNAGTTPGAILAFSWACNDAVMTS 1050


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +3

Query: 258 GDSYLSELIRIKIYGLNSNKESKHVQCVLKSIPKNVSRRLTFRSNE 395
           G+ ++ +++      L +N   KH   +L S+ K   R    R+N+
Sbjct: 64  GEQWMQKVVSFHKLKLTNNISDKHGFTILNSMHKYQPRFHLVRAND 109


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 504 ITISGICRTVHWRFLRLGTLIVQ 436
           +TISG+ RT  ++ L    LIVQ
Sbjct: 45  VTISGVYRTDFYKKLSPMRLIVQ 67


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +1

Query: 361 TYLGA*RSAAMSSSITRSVSTRKSYLNYQSSEPQKAPMNRSTNARNCYSHTS 516
           TY  +  S+  S +   S +  +      SS+P  +  N +TN  N Y + S
Sbjct: 209 TYTNSANSSIWSPASIDSFTLEQHRSWCSSSQPVLSTTNSTTNCYNNYPYYS 260


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,622
Number of Sequences: 336
Number of extensions: 3296
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)