Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_A08
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    28   1.1  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    28   1.5  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    28   1.5  
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    27   2.6  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   4.6  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    26   6.1  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    26   6.1  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   6.1  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    26   6.1  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   6.1  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    25   8.0  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   8.0  

>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 141 TLTGVSPLITNERLNESLTKWFGEDTTFTHWEYVGDTGKGDSYLSELIR 287
           T+T  S   +N R  ES+T   G    + +WE++  T KG+S++   IR
Sbjct: 294 TVTDDSTSPSNYRFIESVT--CGTPFVYENWEWIPVTIKGNSFMLNQIR 340


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +1

Query: 367 LGA*RSAAMSSSITRSVSTRKSYLNYQSSEPQKAPMNRSTNARNCYSHTSTGSMTSFVWK 546
           LG  RSA+M S    +++   +Y ++ S   +++P+N  +      +   + +  S    
Sbjct: 306 LGLNRSASMMSRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPISNENESDTDDSNTGL 365

Query: 547 TNRYMITAV---PSDRKV*IMTTR 609
            NR   TA    PS RK   + TR
Sbjct: 366 RNRTSPTAAPPPPSRRKTGGLNTR 389


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 193 SPNGSARTQPSPIGSMSATPAR 258
           SP+G+    PSPI S+ + P+R
Sbjct: 141 SPHGNTSNHPSPISSLESLPSR 162


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 177 RLNESLTKWFGEDTTFTHWEYVGDTGKGDSYLSELIR 287
           +L+  L  W   D  F H+   GD GK D +++ L+R
Sbjct: 214 QLSSPLGGW--RDRKFKHFIEGGDAGKRDEHINSLVR 248


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 358 KTYLGA*RSAAMSSSITRSVSTRKSYL-NYQSSEPQKAPMNRSTNARNCYSHTS 516
           K+Y  +  S+A SSS + S+S    Y   Y S+ P  A  N  ++  + Y ++S
Sbjct: 112 KSYSDSSTSSARSSSTSGSISLYDDYYPAYSSNAPNTAISNYVSSGLSYYGNSS 165


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 234 EYVGDTGKGDSYLSELIRIKIYGLNSNKESKHVQCVLKSIPKNVSR 371
           E  GD  KG S +       I G N + +S H+Q + KSI K  +R
Sbjct: 5   EAEGDILKGKSRIL-FPGTYIVGRNVSDDSSHIQVISKSISKRHAR 49


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +2

Query: 110 KAKQNGRRLQNVDRRVSSHHQRETERISHQMVRRGHNLHPLGVCRRHRQG*FLPQRVDSH 289
           K K   +R ++ +R+     +   ++I  Q  R    LH  G    H  G    ++VD  
Sbjct: 519 KTKLENQR-RDKERQEELRRKEAMQKIEEQSKRDYDKLHGEG----HSLGINNVRKVDEL 573

Query: 290 QNLRPEFEQRVE 325
           Q+L PE   R+E
Sbjct: 574 QSLSPEMRMRIE 585


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 382 SAAMSSSITRSVSTRKSYLNYQSSEPQKAPMNRSTNARNCYSHTSTGSMTS 534
           S++ SSS + S S+  S  +  SS     P+  ST++    SH+S+ S +S
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSS----SHSSSSSSSS 226


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 291 KIYGLN--SNKESKHVQCVLKSIPKNVSRRLTFRSNEFFYNEIS 416
           ++YG++   NK+ +  +  L    K   R++      FF+NEIS
Sbjct: 264 RVYGISFPDNKQMQEYKTFLAEAAKRDHRKIGRDQELFFFNEIS 307


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 424 RKSYLNYQSSEPQKAPMNRSTNAR-NCYSHTSTGSMTSFV 540
           R   L+  +SE  K    R   A  NC++HTS  S+ SF+
Sbjct: 660 RLEQLSEFNSEKFKTVSKREVEALVNCFNHTSFTSLLSFL 699


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 559 YIDSSSKQMTSWTPSTYENNNFGHLSNGS 473
           Y     +Q  S TP+ Y N+N GH S  S
Sbjct: 21  YAKPQPRQPASPTPTAYLNSNDGHSSAAS 49


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 433 YLNYQSSEPQKA 468
           YLNYQ +EP+KA
Sbjct: 321 YLNYQENEPEKA 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,826
Number of Sequences: 5004
Number of extensions: 56835
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)