Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_A08
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.30 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 17/76 (22%), Positives = 33/76 (43%)
 Frame = +2

Query: 128 RRLQNVDRRVSSHHQRETERISHQMVRRGHNLHPLGVCRRHRQG*FLPQRVDSHQNLRPE 307
           RRL + D+R+S     +  +  HQ +    + HP        Q    PQ+    Q  +P+
Sbjct: 789 RRLMSEDKRLSKSVNGDQSQPPHQQLHHHQSTHP------QAQAQAQPQQQQQQQQQQPQ 842

Query: 308 FEQRVEARPVRIKEHP 355
            +Q+ + +  + +  P
Sbjct: 843 QQQQQQQQQQQQQRGP 858


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
 Frame = +3

Query: 192 LTKWFGEDTTFTHWEYVGDTGKGDSYLSELIRIKIYGLNSNKESKHVQCVLKSIPK--NV 365
           L KW   D  +  WE + +       L E  R ++  L S K   +     + I K  N 
Sbjct: 262 LIKWKNWDLKYNTWEPISNLINCSDILEEFERNRLQLLESFKRKVNFYPNNQDIEKFLNY 321

Query: 366 SRR-------LTFRSNEFFYNEISFYEKVLPELSK 449
            +R       ++  SN  F N + F ++   + SK
Sbjct: 322 LKRGGKTLTSISVESNTMFINILKFLKQKYVKNSK 356


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 264 SYLSELIRIKIYGLNSN 314
           +YLS   RI  Y +NSN
Sbjct: 445 AYLSRSERINYYNVNSN 461


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,964
Number of Sequences: 438
Number of extensions: 3828
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)