Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_A07
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    33   0.048
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    27   2.4  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    27   3.2  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   9.6  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    25   9.6  

>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 33.1 bits (72), Expect = 0.048
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 704 DTELLXAAGPSLKVVATISVGHDHIDVAECXKRGV 808
           D E++    PS+K +  +  G++ +DVA C  RG+
Sbjct: 70  DKEIIDNLPPSVKFICHLGAGYETVDVAACTARGI 104


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 157 NTTKSL*NDFNYMDFFKSLILHLSRYLHNIN*TIRY 50
           N T+ + N  N ++F+K    HLSRYLH I  + RY
Sbjct: 174 NQTQEI-NGSNLLEFYKDS-KHLSRYLHIIANSPRY 207


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 490 SWWYCYCKEHECKRTISNIRDEV--*YAREWST 582
           S+ YC C++ E +++I +I +E+   Y + W T
Sbjct: 159 SFCYCSCEQKEWQQSIKSIEEELVEKYQQSWKT 191


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 388 TFSCIETRDPEVGHPERHEIHVL*KYFNDHLRS 486
           TFS ++     +  PERH   VL K+ N+HL++
Sbjct: 332 TFSLLDNSISMLDSPERH---VLEKFLNNHLQN 361


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 587 LKDQCDVNLWNQPSPVPRAELLKEVAGVNGIYCXLTDKIDT 709
           + D C +NLW+  +      LL+EVAG N     L +K+ T
Sbjct: 201 ISDVCGMNLWDIQNEKFDIRLLEEVAG-NSKGPDLANKLGT 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,334
Number of Sequences: 5004
Number of extensions: 64068
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)