Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_A07
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z73427-4|CAA97802.3|  601|Caenorhabditis elegans Hypothetical pr...    29   5.2  

>Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical
           protein C31C9.2 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 644 ELLKEVAGVNGIYCXLTDKIDTELLXAAGPSLKVVATISVGHDHIDV 784
           ELL  +   + +      KI  ELL A+   LK+V     G D+IDV
Sbjct: 39  ELLVTLPQHDAVIVRSATKITAELLAASAGKLKLVGRAGTGVDNIDV 85


>Z73427-4|CAA97802.3|  601|Caenorhabditis elegans Hypothetical
           protein F58B3.4 protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 476 TSDLFRGGIAIVRNMSAKGRYQIYVTRSDMPESGVQLLKDQCDVNLWNQPSPV 634
           +S  F+G + + +    K +    V  +  PE  VQ LK Q D   WN+   V
Sbjct: 549 SSKKFKGSLLVTKQAEQKSKGSSTVIETKKPEDLVQKLKKQAD--KWNKKKSV 599


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,694,129
Number of Sequences: 27780
Number of extensions: 356680
Number of successful extensions: 687
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)