Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_A03
         (880 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    72   2e-11
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther...    40   0.063
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    38   0.44 
UniRef50_Q64X96 Cluster: Two-component system response regulator...    35   3.1  
UniRef50_Q554D7 Cluster: Putative uncharacterized protein; n=2; ...    33   7.2  
UniRef50_Q0B035 Cluster: Putative uncharacterized protein; n=1; ...    33   9.6  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score = 72.1 bits (169), Expect = 2e-11
 Identities = 32/38 (84%), Positives = 35/38 (92%)
 Frame = +2

Query: 497  HNNRLIVAAADYSPNPDHAGASHRRRPRHVLMNSSNLI 610
            H+NRLIVAAADYSPNPDHAGASHRRRPRHVL + S+ I
Sbjct: 890  HDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPI 927



 Score = 66.1 bits (154), Expect = 1e-09
 Identities = 31/39 (79%), Positives = 34/39 (87%)
 Frame = +1

Query: 379 LAVGAPSFVRNVDLHNDLDLESIRKYTKPASERYFDKAV 495
           LAVGAP FVRNVDLH+DL LESIRK+ K  SERYFDKA+
Sbjct: 850 LAVGAPWFVRNVDLHDDLGLESIRKHMKSVSERYFDKAM 888


>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
           mylitta|Rep: Reverse transcriptase-like - Antheraea
           mylitta (Tasar silkworm)
          Length = 186

 Score = 40.3 bits (90), Expect = 0.063
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +1

Query: 388 GAPSFVRNVDLHNDLDLESIRKYTKPASERYFDKAVS**SP 510
           G P ++R VDLH +L++ SI  Y K  +  YF+KA +  SP
Sbjct: 64  GTPWYIRRVDLHRNLEIPSIWTYVKSLTISYFEKAANHPSP 104



 Score = 33.5 bits (73), Expect = 7.2
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +2

Query: 497 HNNRLIVAAADYSPNPDHAGASHRRRPRHVLMN 595
           H + L+V+AA+Y P P+   A  RRRPRH+ ++
Sbjct: 101 HPSPLVVSAANYQPVPN--AARPRRRPRHIFID 131


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=25; Arthropoda|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 986

 Score = 37.5 bits (83), Expect = 0.44
 Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +1

Query: 766 QLLMLHKAQVQRHVEYC--FIGRDAKYQALPFESIHKK 873
           Q L+L+KAQV+  VEYC        KYQ LPF+SI ++
Sbjct: 817 QRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRR 854


>UniRef50_Q64X96 Cluster: Two-component system response regulator;
           n=1; Bacteroides fragilis|Rep: Two-component system
           response regulator - Bacteroides fragilis
          Length = 338

 Score = 34.7 bits (76), Expect = 3.1
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +1

Query: 304 FKMGYLKNENSCNN--RASLYDRIKKLLAVGAPSFVRNVDLHNDLDLESIRKYT 459
           FK+G L +   C N  R+S Y++IK++       +VRNV L+  L L   RKYT
Sbjct: 253 FKIGELSD---CMNMSRSSFYNKIKEITGHAPADYVRNVRLNRALVLLMSRKYT 303


>UniRef50_Q554D7 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 514

 Score = 33.5 bits (73), Expect = 7.2
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 30  IYG*LLVMYGTFFVCKHAHSASCW-MTKSDSGTLDLVITRLV*DPLLTKLSGFKFTLNLA 206
           ++G L V+Y   F   +A  AS W + KSDS T+ + +T    +PLLT +  + F   + 
Sbjct: 252 LFGWLSVIYCAIFATAYAFFASSWAVAKSDSTTVSVYLTV---EPLLTGVLAYIFLSEIL 308

Query: 207 T 209
           T
Sbjct: 309 T 309


>UniRef50_Q0B035 Cluster: Putative uncharacterized protein; n=1;
           Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
           Putative uncharacterized protein - Syntrophomonas wolfei
           subsp. wolfei (strain Goettingen)
          Length = 153

 Score = 33.1 bits (72), Expect = 9.6
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
 Frame = +1

Query: 262 NPDIIRALGSWIIKFKMGYLKNE--NSCNNRASLYDRIKKLLAVGAPSFVRNVDLHNDLD 435
           N +++R +G+ IIK  +G +K++  N     A+LYD+  KL A G  +F+R     + L 
Sbjct: 85  NVNLLRPVGTGIIK-SVGMVKHQARNRLVAEANLYDQEGKLAACGTGNFMR-----SPLK 138

Query: 436 LESIRKYTKPASE 474
           L  + +YT+  S+
Sbjct: 139 LGEMPEYTRELSD 151


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 759,630,998
Number of Sequences: 1657284
Number of extensions: 13522247
Number of successful extensions: 29483
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29478
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78702453312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)