Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_A03
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937           30   2.1  
05_07_0081 - 27572047-27572925,27573285-27573419                       30   2.8  
12_01_0342 + 2634678-2635937                                           29   6.5  
12_01_0334 - 2573375-2574634                                           29   6.5  
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365...    28   8.6  

>03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937
          Length = 860

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +2

Query: 509 LIVAAADYSPNPDHAGASHRRRPRHVLMNSSNLIKSN*RKVSLSC*SKRPRVSIKVN 679
           L   AAD +P P   GA  RR PR  ++ ++ LI  +    S    S RPR  +  N
Sbjct: 12  LATGAADQAPAPAALGALRRRLPR--VVTTAGLIDDSPLSPSTPSPSPRPRTIVVAN 66


>05_07_0081 - 27572047-27572925,27573285-27573419
          Length = 337

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 57  GTFFVCKHAHSASCWMTKSDSGTLDLVITRLV 152
           G  F C H HS S W ++  SG     I++L+
Sbjct: 273 GVLFACMHGHSCSQWCSRVCSGIATYSISQLL 304


>12_01_0342 + 2634678-2635937
          Length = 419

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 246 RYTGIKS*HNSCPWFLDHQVQDGVF 320
           ++T IK  +N C WF D    DGVF
Sbjct: 220 KWTWIKMGNNECEWFEDCIYHDGVF 244


>12_01_0334 - 2573375-2574634
          Length = 419

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 246 RYTGIKS*HNSCPWFLDHQVQDGVF 320
           ++T IK  +N C WF D    DGVF
Sbjct: 220 KWTWIKMGNNECEWFEDCIYHDGVF 244


>05_01_0462 -
           3658153-3658290,3658394-3658540,3658622-3658720,
           3658802-3659253,3659597-3660280,3662072-3662180
          Length = 542

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 518 AAADYSPNPDHA-GASHRRRPRHVLMNSSNLIKS 616
           +AA  S  P HA  A+H R PRHV +  S   +S
Sbjct: 356 SAASSSVQPFHAEAAAHLRHPRHVSVGGSGSARS 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,881,391
Number of Sequences: 37544
Number of extensions: 352426
Number of successful extensions: 787
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)