Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P22
(562 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9NQL2 Cluster: Ras-related GTP-binding protein D; n=71... 207 1e-52
UniRef50_Q9TVH6 Cluster: Putative uncharacterized protein; n=2; ... 139 5e-32
UniRef50_Q0V1T5 Cluster: Putative uncharacterized protein; n=1; ... 124 2e-27
UniRef50_Q0CMC9 Cluster: GTP-binding protein GTR2; n=13; Pezizom... 116 4e-25
UniRef50_A2QAA2 Cluster: Similarity to hypothetical Ras-like GTP... 115 7e-25
UniRef50_UPI0001509B9C Cluster: Gtr1/RagA G protein conserved re... 114 1e-24
UniRef50_A0DFQ8 Cluster: Chromosome undetermined scaffold_49, wh... 99 6e-20
UniRef50_P53290 Cluster: GTP-binding protein GTR2; n=13; Sacchar... 98 1e-19
UniRef50_Q5CV88 Cluster: RagC like small GTpase of the Ras super... 77 2e-13
UniRef50_UPI0000499AF6 Cluster: GTP-binding protein; n=1; Entamo... 52 9e-06
UniRef50_Q676B9 Cluster: ENSANGG00000019048-like protein; n=1; O... 51 2e-05
UniRef50_Q4Q0H2 Cluster: Small GTPase, putative; n=6; Trypanosom... 48 1e-04
UniRef50_Q5DAG2 Cluster: SJCHGC03284 protein; n=1; Schistosoma j... 46 6e-04
UniRef50_Q4PA99 Cluster: Putative uncharacterized protein; n=1; ... 41 0.023
UniRef50_Q5KJQ0 Cluster: Expressed protein; n=1; Filobasidiella ... 34 2.0
UniRef50_Q3CK68 Cluster: Peptidoglycan-binding domain 1 precurso... 33 4.6
UniRef50_Q9XZX4 Cluster: Putative uncharacterized protein L2743.... 33 4.6
UniRef50_A3GGW6 Cluster: Predicted protein; n=2; Pichia stipitis... 33 6.0
UniRef50_Q484G1 Cluster: GTP cyclohydrolase-2; n=4; Gammaproteob... 32 8.0
UniRef50_A0DML8 Cluster: Chromosome undetermined scaffold_56, wh... 32 8.0
UniRef50_Q8SL86 Cluster: DNA-directed RNA polymerase subunit alp... 32 8.0
>UniRef50_Q9NQL2 Cluster: Ras-related GTP-binding protein D; n=71;
Eukaryota|Rep: Ras-related GTP-binding protein D - Homo
sapiens (Human)
Length = 400
Score = 207 bits (506), Expect = 1e-52
Identities = 100/149 (67%), Positives = 120/149 (80%), Gaps = 1/149 (0%)
Frame = -2
Query: 561 NLLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYGMVDE 382
NLLNI ISNSGIEKAFLFDVVSKIYIATDS+PVDMQ+YELCCDMIDVVIDISCIYG+ ++
Sbjct: 246 NLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDISCIYGLKED 305
Query: 381 TETNTFNNESSSLIKLNNGTVLYLREVNKFLALVCILREENFQKQGVIDYNFLCFRHAIT 202
++ ES+++IKLNN TVLYL+EV KFLALVC +REE+F+++G+IDYNF CFR AI
Sbjct: 306 GAGTPYDKESTAIIKLNNTTVLYLKEVTKFLALVCFVREESFERKGLIDYNFHCFRKAIH 365
Query: 201 QVFELRNK-CQSSGTDRRRSGTPDAVPNG 118
+VFE+R K +S R A PNG
Sbjct: 366 EVFEVRMKVVKSRKVQNRLQKKKRATPNG 394
>UniRef50_Q9TVH6 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 338
Score = 139 bits (336), Expect = 5e-32
Identities = 67/127 (52%), Positives = 97/127 (76%)
Frame = -2
Query: 558 LLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYGMVDET 379
LL++ ++S + K+FLFD++SKIYIATDS PV+M YELCCDMIDV +D+S IYG V E
Sbjct: 210 LLDVFNNSSKVTKSFLFDILSKIYIATDSEPVEMSIYELCCDMIDVTLDLSSIYG-VAEN 268
Query: 378 ETNTFNNESSSLIKLNNGTVLYLREVNKFLALVCILREENFQKQGVIDYNFLCFRHAITQ 199
+N ++ SSS+I+L + V++LR+VNK LALV I++E+ +K G ID+NF F+ I Q
Sbjct: 269 GSN-YDERSSSVIRLKSEQVMFLRQVNKHLALVFIMKEDGNEKAGFIDHNFGVFKAGIEQ 327
Query: 198 VFELRNK 178
VF+++N+
Sbjct: 328 VFKVKNR 334
>UniRef50_Q0V1T5 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 628
Score = 124 bits (298), Expect = 2e-27
Identities = 67/129 (51%), Positives = 90/129 (69%), Gaps = 7/129 (5%)
Frame = -2
Query: 558 LLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYG--MVD 385
LLN L IEKA+LFD++SKIYIATD+SP D+ +YE+C D IDVVID+S IYG +
Sbjct: 185 LLNNLCGACNIEKAYLFDIMSKIYIATDTSPTDIATYEVCSDYIDVVIDVSEIYGWDRPE 244
Query: 384 ET--ETNTFNNESSSLIKL--NNGTVLYLREVNKFLALVCILREEN-FQKQGVIDYNFLC 220
E E+ T NN++ SLI + LYLRE+NK+LALVCI+ +E+ +K+ +IDYN
Sbjct: 245 EAPDESETGNNDAESLITMEKKGSRYLYLREINKYLALVCIMGQEHPAEKKAIIDYNVGV 304
Query: 219 FRHAITQVF 193
F+ + QVF
Sbjct: 305 FQAGLKQVF 313
>UniRef50_Q0CMC9 Cluster: GTP-binding protein GTR2; n=13;
Pezizomycotina|Rep: GTP-binding protein GTR2 -
Aspergillus terreus (strain NIH 2624)
Length = 377
Score = 116 bits (279), Expect = 4e-25
Identities = 57/126 (45%), Positives = 85/126 (67%), Gaps = 3/126 (2%)
Frame = -2
Query: 561 NLLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYGM--V 388
NL+N L +N G EK +LFDV+SKIYIA+D+ PVDM YE+C D IDV++DIS +Y
Sbjct: 224 NLINTLANNCGFEKTYLFDVLSKIYIASDTRPVDMSCYEMCSDYIDVIVDISELYSWDHP 283
Query: 387 DETETNTFNNESSSLIKLNNGTVLYLREVNKFLALVCILRE-ENFQKQGVIDYNFLCFRH 211
D N E+ S + L++ T+++L E+NK+L LV ++R E +K+G+ID N F+
Sbjct: 284 DRKPKGDQNQEAESHVVLHDETMIHLMEMNKYLCLVSVIRNPEAKEKKGLIDMNCRTFQE 343
Query: 210 AITQVF 193
++ +VF
Sbjct: 344 SLNEVF 349
>UniRef50_A2QAA2 Cluster: Similarity to hypothetical Ras-like
GTP-binding protein RagC - Homo sapiens; n=1;
Aspergillus niger|Rep: Similarity to hypothetical
Ras-like GTP-binding protein RagC - Homo sapiens -
Aspergillus niger
Length = 384
Score = 115 bits (277), Expect = 7e-25
Identities = 58/126 (46%), Positives = 83/126 (65%), Gaps = 3/126 (2%)
Frame = -2
Query: 561 NLLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYGM--V 388
NL+N L +N G EK +LFDV+SKIYIA+D+ PVDM YE+C D IDV++DIS +Y
Sbjct: 242 NLINTLSNNCGFEKTYLFDVLSKIYIASDTRPVDMSCYEMCSDYIDVIVDISELYSWDHP 301
Query: 387 DETETNTFNNESSSLIKLNNGTVLYLREVNKFLALVCILRE-ENFQKQGVIDYNFLCFRH 211
D N E+ S L++ T+++L E+NK+L LV ++R E+ K+G+ID N F+
Sbjct: 302 DRKAKGEQNQEAESHAVLHDDTMIHLMEMNKYLCLVSVIRNPESKDKKGLIDMNCRTFQE 361
Query: 210 AITQVF 193
A+ VF
Sbjct: 362 ALNDVF 367
>UniRef50_UPI0001509B9C Cluster: Gtr1/RagA G protein conserved
region containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Gtr1/RagA G protein conserved region
containing protein - Tetrahymena thermophila SB210
Length = 311
Score = 114 bits (275), Expect = 1e-24
Identities = 54/112 (48%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Frame = -2
Query: 561 NLLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYGMVDE 382
+LL L++NS +EKAFLFD V+K+YIATD+ P D +Y++C +MIDV +DIS IY D
Sbjct: 187 SLLTSLVTNSKMEKAFLFDQVNKLYIATDAGPFDQNTYQMCFEMIDVFLDISFIY---DP 243
Query: 381 TETNTFNNESSSL-IKLNNGTVLYLREVNKFLALVCILREENFQKQGVIDYN 229
TE N SL IKL++ TVL ++ ++L L+CI+++EN+ + +IDYN
Sbjct: 244 TENGQIKNSEGSLSIKLSDNTVLLMKSFKEYLCLICIIKQENYVRPFIIDYN 295
>UniRef50_A0DFQ8 Cluster: Chromosome undetermined scaffold_49, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_49,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 305
Score = 99.1 bits (236), Expect = 6e-20
Identities = 44/115 (38%), Positives = 78/115 (67%)
Frame = -2
Query: 528 IEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYGMVDETETNTFNNESS 349
IEK+FLF++ SK+Y+A+DS +++LC +MIDV ID++CIYG +D+
Sbjct: 199 IEKSFLFEIYSKLYLASDSQHFHSTNFQLCSEMIDVFIDVTCIYGKLDDA--------GQ 250
Query: 348 SLIKLNNGTVLYLREVNKFLALVCILREENFQKQGVIDYNFLCFRHAITQVFELR 184
S IKL++G++L + VN+ ++L+ IL+ EN ++ +++YN FR + Q+F+++
Sbjct: 251 SQIKLSDGSILIYQTVNEGISLISILKSENLERPFLLEYNINQFRQGLAQIFKIK 305
>UniRef50_P53290 Cluster: GTP-binding protein GTR2; n=13;
Saccharomycetales|Rep: GTP-binding protein GTR2 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 341
Score = 97.9 bits (233), Expect = 1e-19
Identities = 55/135 (40%), Positives = 81/135 (60%), Gaps = 12/135 (8%)
Frame = -2
Query: 561 NLLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIY----- 397
N+L+ LI +S IEKAFLFDV SKIY++TDS+PVD+Q YE+C + IDV ID+ +Y
Sbjct: 191 NMLDNLIQHSKIEKAFLFDVNSKIYVSTDSNPVDIQMYEVCSEFIDVTIDLFDLYKAPVL 250
Query: 396 --GMVDETETNTFN--NESSSLIKLNNGTVLYLREVNKFLALVCILREENFQKQG---VI 238
+ N N NE ++ +L NG ++YLR++ + LALV I+R + V
Sbjct: 251 RNSQKSSDKDNVINPRNELQNVSQLANGVIIYLRQMIRGLALVAIIRPNGTDMESCLTVA 310
Query: 237 DYNFLCFRHAITQVF 193
DYN F+ + ++
Sbjct: 311 DYNIDIFKKGLEDIW 325
>UniRef50_Q5CV88 Cluster: RagC like small GTpase of the Ras
superfamily; n=2; Cryptosporidium|Rep: RagC like small
GTpase of the Ras superfamily - Cryptosporidium parvum
Iowa II
Length = 378
Score = 77.4 bits (182), Expect = 2e-13
Identities = 36/120 (30%), Positives = 73/120 (60%)
Frame = -2
Query: 558 LLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYGMVDET 379
LL++L+ +S +EKAFL D+ S+ ++A+DSS D +ELC D+++V+ +I+ IY
Sbjct: 256 LLDVLVISSSLEKAFLMDIYSRTFVASDSSLFDPIGFELCADILNVISEINEIY--APNC 313
Query: 378 ETNTFNNESSSLIKLNNGTVLYLREVNKFLALVCILREENFQKQGVIDYNFLCFRHAITQ 199
+ ++ S I L++G +L+++ ++ + L C++R E+ + +I+ N + + Q
Sbjct: 314 SLSRSSSGISCSINLDSGHLLHIQSIDHNIVLACVIRNEHVKNTSLININIDILKQTLIQ 373
>UniRef50_UPI0000499AF6 Cluster: GTP-binding protein; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: GTP-binding protein -
Entamoeba histolytica HM-1:IMSS
Length = 305
Score = 52.0 bits (119), Expect = 9e-06
Identities = 32/121 (26%), Positives = 58/121 (47%)
Frame = -2
Query: 558 LLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYGMVDET 379
LL + AFL + +++YIAT + SY C + + ID+ Y +
Sbjct: 189 LLENYVEKCPANDAFLIHIPTRLYIATTKG--NSSSYGFCKEAFNFFIDVFSTYSSEQQL 246
Query: 378 ETNTFNNESSSLIKLNNGTVLYLREVNKFLALVCILREENFQKQGVIDYNFLCFRHAITQ 199
E E ++I+ +N + +YL+ V+ +L LV +L + + G+ DYNF + I +
Sbjct: 247 E------EGKTMIQCDNHSHVYLKVVSPYLCLVMLLGDTQERDIGLYDYNFTILQKGIEE 300
Query: 198 V 196
+
Sbjct: 301 L 301
>UniRef50_Q676B9 Cluster: ENSANGG00000019048-like protein; n=1;
Oikopleura dioica|Rep: ENSANGG00000019048-like protein -
Oikopleura dioica (Tunicate)
Length = 391
Score = 50.8 bits (116), Expect = 2e-05
Identities = 22/48 (45%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Frame = -2
Query: 555 LNILISNSGIEKAFLFDVVSKIYIATDSSPVD---MQSYELCCDMIDV 421
LN++I+N+ + KA+L DV +K++IATDSSP + + YE+C MI++
Sbjct: 226 LNLMINNANVAKAYLMDVRTKLFIATDSSPAENTQLSIYEICSGMIEM 273
Score = 42.7 bits (96), Expect = 0.006
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = -2
Query: 387 DETETNTFNNESSSLIKLNNGTVLYLREVNKFLALVCILREENFQKQGVIDYNFLCFRHA 208
DE F+ S + + VL L + LALVC++RE+ ++G++ YN FR
Sbjct: 322 DEDIMPAFDENHESWVTMKEEIVLCLYGITSNLALVCVVREDALNQRGIMMYNLNLFRQT 381
Query: 207 ITQVFE 190
I + E
Sbjct: 382 IRKTLE 387
>UniRef50_Q4Q0H2 Cluster: Small GTPase, putative; n=6;
Trypanosomatidae|Rep: Small GTPase, putative -
Leishmania major
Length = 365
Score = 48.4 bits (110), Expect = 1e-04
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = -2
Query: 558 LLNILISNSGIEKAFLFDVVSKIYIATDS-SPVDMQSYELCCDMIDVVIDISCIY 397
LL +L SNS I+ ++LF SKIY+A D + + ++Y+LC D I+VV+ +S IY
Sbjct: 200 LLQMLNSNSNIDLSYLFLSHSKIYVAVDERNRLKSRTYDLCSDAIEVVVKMSGIY 254
>UniRef50_Q5DAG2 Cluster: SJCHGC03284 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03284 protein - Schistosoma
japonicum (Blood fluke)
Length = 112
Score = 46.0 bits (104), Expect = 6e-04
Identities = 16/44 (36%), Positives = 32/44 (72%)
Frame = -2
Query: 309 REVNKFLALVCILREENFQKQGVIDYNFLCFRHAITQVFELRNK 178
R +N+++AL+C++ EE+ +K G+I++NF + A+ Q+ EL +
Sbjct: 8 RGINQYMALLCLMYEESLEKMGLIEFNFCVIKKALQQMLELNQQ 51
>UniRef50_Q4PA99 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 512
Score = 40.7 bits (91), Expect = 0.023
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -2
Query: 558 LLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIY-GMVDE 382
L + + S + AFLFD+ +K +I TDS+P D S++L D + + +Y G+ +
Sbjct: 376 LCDSICSTCWFDSAFLFDLPTKTFIGTDSAPFDAASFDLAFDYAGFLGKFAGLYAGVQSD 435
Query: 381 TETNT 367
T+T
Sbjct: 436 AATST 440
>UniRef50_Q5KJQ0 Cluster: Expressed protein; n=1; Filobasidiella
neoformans|Rep: Expressed protein - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 543
Score = 34.3 bits (75), Expect = 2.0
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Frame = -2
Query: 432 MIDVVIDISCIYGMVDETETNTFNN-ESSSLIKLNNGTVLY-LREVNKFLALVCILREEN 259
++D+ I+ + +Y +E ++N+ E + +L +++ L + +F+ V +R +N
Sbjct: 213 VVDLCIEGNILYRFNEEVKSNSSTEVELENKRRLPIYLIIFGLAHLWQFVLTVVAIRTKN 272
Query: 258 -FQKQGVIDYNFLCFRHAITQVFELRNKCQSSGTDRRRSGT 139
Q V +NF +A+ Q+FELR S+ D GT
Sbjct: 273 SIQVFAVTIFNFAFLGYAVIQIFELRKILGSNLADGLTGGT 313
>UniRef50_Q3CK68 Cluster: Peptidoglycan-binding domain 1 precursor;
n=3; Thermoanaerobacter ethanolicus|Rep:
Peptidoglycan-binding domain 1 precursor -
Thermoanaerobacter ethanolicus ATCC 33223
Length = 1089
Score = 33.1 bits (72), Expect = 4.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 378 ETNTFNNESSSLIKLNNGTVLYLREVN 298
ETN NN+ +L+K NNG LY+ +N
Sbjct: 817 ETNLSNNKIQTLVKANNGVDLYIASIN 843
>UniRef50_Q9XZX4 Cluster: Putative uncharacterized protein L2743.06;
n=3; Leishmania|Rep: Putative uncharacterized protein
L2743.06 - Leishmania major
Length = 1452
Score = 33.1 bits (72), Expect = 4.6
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 192 ELRNKCQSSGTDRRRSGTPDAVPNGAADST--ESTSDHSQPQL 70
EL + ++ G D+RR+G+P VP A S S S HS P L
Sbjct: 122 ELHHNLKNVGVDQRRNGSPVVVPPAAPASNPLPSASSHSGPAL 164
>UniRef50_A3GGW6 Cluster: Predicted protein; n=2; Pichia
stipitis|Rep: Predicted protein - Pichia stipitis
(Yeast)
Length = 705
Score = 32.7 bits (71), Expect = 6.0
Identities = 20/87 (22%), Positives = 44/87 (50%)
Frame = -2
Query: 552 NILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYGMVDETET 373
N+ I ++ + + L+++++ + S V ++ + D+I V + +SC + +
Sbjct: 206 NLSIDHTKVSNSQLYNLLNHYLYSFISYQVYVKCEDFSIDLIYVCLILSC--WCLPPNKM 263
Query: 372 NTFNNESSSLIKLNNGTVLYLREVNKF 292
F N+ +SL N G + L E++KF
Sbjct: 264 GQFRNQLNSLTAFNMGLCIDLGEISKF 290
>UniRef50_Q484G1 Cluster: GTP cyclohydrolase-2; n=4;
Gammaproteobacteria|Rep: GTP cyclohydrolase-2 -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 204
Score = 32.3 bits (70), Expect = 8.0
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -2
Query: 360 NESSSLIKLNNGTVLYLREVNKFLALVCILREENFQKQGVIDY 232
+ES +++K N G +LYLR+ + + L L FQ+QG+ Y
Sbjct: 79 DESINIMKDNGGIILYLRQEGRGIGLYNKLDAYLFQEQGIDTY 121
>UniRef50_A0DML8 Cluster: Chromosome undetermined scaffold_56, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_56,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1755
Score = 32.3 bits (70), Expect = 8.0
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Frame = -2
Query: 561 NLLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQ-------SYELC-CDMIDVVIDIS 406
N L + N G ++ FD++ + + ++P+ +Q ++L ++ D++I S
Sbjct: 36 NRLEFVFQNRG--QSIDFDIIDTNFYSDRTNPIKLQWSSDNFLKFDLNNVNIFDLIIKNS 93
Query: 405 CIYGMV--DETETNTFNNESSSLIKLNNGTVLYLREVNKFLAL-VCILREENFQKQGVID 235
I+ ++ DE E T N S NN T+LY + + + + I+ F +I
Sbjct: 94 LIFSIISSDEGELITLKNLQLSNCIFNNSTLLYFSNMRRLIRIDSLIITTCQFYSSSIIT 153
Query: 234 YN 229
N
Sbjct: 154 IN 155
>UniRef50_Q8SL86 Cluster: DNA-directed RNA polymerase subunit alpha;
n=1; Euglena viridis|Rep: DNA-directed RNA polymerase
subunit alpha - Euglena viridis
Length = 214
Score = 32.3 bits (70), Expect = 8.0
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = -3
Query: 314 IYERSTNSWHWFAFSGKKISKNKV*SITISYVSGMLLRKSLNFVINVKVLELTEEDRVLQ 135
IY RS NS FA ++I K + +SG + K+ F + K+ E +E + + +
Sbjct: 25 IYPRSENSLI-FANQLRRILLGKSEGLRFLKISGFIANKNSKFSVYQKINEFSEFEEINE 83
Query: 134 MLFQTVLQI 108
+FQ L I
Sbjct: 84 SVFQLFLNI 92
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,397,526
Number of Sequences: 1657284
Number of extensions: 9784468
Number of successful extensions: 27908
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 26998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27885
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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