Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P22
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p... 152 3e-38
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.3
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 26 3.3
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 4.4
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 4.4
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 4.4
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 4.4
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 5.8
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 25 7.6
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 25 7.6
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 7.6
>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 314
Score = 152 bits (369), Expect = 3e-38
Identities = 71/129 (55%), Positives = 99/129 (76%), Gaps = 3/129 (2%)
Frame = -2
Query: 561 NLLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYGMVDE 382
NLLNI SNS +EKA+LFDV+SKIY+ATDSSPVD+QSYE+C D IDV++DI IYG +
Sbjct: 185 NLLNIFCSNSLVEKAYLFDVLSKIYVATDSSPVDVQSYEICSDFIDVILDIGSIYGRSSQ 244
Query: 381 TE---TNTFNNESSSLIKLNNGTVLYLREVNKFLALVCILREENFQKQGVIDYNFLCFRH 211
+ + +E+SS+I+L+N VL+LRE+N++LAL+CI+R +NF+K G+I+YN C +
Sbjct: 245 LKPGHSPEILDETSSVIRLSNDLVLFLREMNQYLALICIVRADNFEKSGLIEYNVQCLQT 304
Query: 210 AITQVFELR 184
AI +F R
Sbjct: 305 AIQSIFSPR 313
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 26.2 bits (55), Expect = 3.3
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 465 VDMQSYELCCDMIDVVID-ISCIYGMVDETETNTFNNESSSLIKLNNGTVLYLREV 301
+DM++ + + I V D +C+ G+ D N F N S +I + LYL E+
Sbjct: 687 IDMETEQPTLNQILEVNDSFTCVSGIYDIP--NKFQNSESRIIVYYSNNTLYLSEL 740
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 171 SSGTDRRRSGTPDAVPNGAADSTESTSDHSQP 76
+S T R GTP + PN A +S ++ + S+P
Sbjct: 198 TSSTLRSTQGTPMSFPNLALESADNVENVSKP 229
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 396 GMVDETETNTFNNESSSLIK 337
GM DET + T NN S L++
Sbjct: 300 GMTDETNSLTINNNSDDLLR 319
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 4.4
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -3
Query: 227 SYVSGMLLRKSL---NFVINVKVLELTEEDRVLQMLFQTVLQIPLR 99
S V G+ R+ L N +++ KVL+LTEE + L+ L Q +I R
Sbjct: 399 SSVDGVKTRRQLLEENALLSHKVLKLTEEIQDLETLNQLNTEIEAR 444
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +3
Query: 369 YLFQFHPPCHKYKIYQLRHQSYHS--KAHSFAY 461
Y + H P HK K+ L YH+ +AH +
Sbjct: 123 YSWSHHTPLHKTKVILLGQDPYHNIGQAHGLCF 155
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 60 VLSLTEAVNDLKYSQWNLQHRLEQHLE 140
V L+ VNDL+ + NL+H+ E +E
Sbjct: 107 VRRLSHEVNDLQTDRENLKHQFEDQIE 133
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 87 DLKYSQWNLQHRL 125
D K+S WNL HRL
Sbjct: 373 DSKFSNWNLPHRL 385
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 312 DIVQYHCLVLSNSNFHC*TYLFQFHPPCHKYKIYQLRHQS 431
D V C + +S F C L+ H + YQ++ Q+
Sbjct: 53 DEVHEFCCLFCDSTFTCLKDLWSHCKEAHNFDFYQVKQQN 92
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 25.0 bits (52), Expect = 7.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -2
Query: 333 NNGTVLYLREVNKFLALVCILREENFQKQGVIDYNFLCFRHAITQVFELRNK 178
N VL VNK + ENFQK G + F +A++Q+ E + K
Sbjct: 25 NKTPVLTSSTVNKEFVAEVFFKCENFQKMGA--FKFRGALNALSQLNEAQRK 74
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 498 SKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYGMVDE 382
+KI S V + SY++C + +D ++ I Y ++DE
Sbjct: 1457 AKIRSKMKKSDVVVTSYDICRNDVDELVKIDWNYCVLDE 1495
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,435
Number of Sequences: 5004
Number of extensions: 45481
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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